Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2156 ATGGAGAATGGTATGGAGGGTGGCCAGTGGTGCAACATATGCTCTAATATGGTGAATCCAATGACTGAAGATGAAAACAAATGCCCAATCTGCGAGACAGAATTTTCCGAGGTGATGGGCAGCCCAAGAGACCATAATGATGGCATTGACCTGGGATCAGCCTTTGTGTTCTCTCTTTATGCTCCAATCTTAATAGGCTTGATGAGTACTATTAGCCCTTCTCTAGGAAGCATTACTTCCCAAGAACATAGCAGCAGCAGCGGTTCACGTGAGGAAGGAGAGGTTGAACAAGAGACGGAACATGAACTTGTACTTAGGAGAAGGAGAAGAACCACAACTTCTCCGATGCTTGTCTTTCGGCGTCTCCGTGATAGGATGGTGTCTGCATCCGAGAACCCAGAAAACAATAGGAATGTAAATCTCAATGTAATTGTCATTGATCCATTCAACGAAGAGGCCTTGATTCTCCGAGATCCGTCCAACCTAAACCAAGCTAGAAATCCAACTGAGAATCTCGTGAGCTCCTTTGGTGACTTTCTGATAGGACCTGGCCTCGACTTATTACTAGAACATTTGGCGCAGAATGACCCAAATAGATATGTTTACGTAAATCCTCCAGCGCAGAAAGCAGCCATTGAAGCAATGCCCAGTGTGACTACTAATGAAAATTTGCAGTGCACAGTATGTTTGGAGGATATTGAGATTGGAAGTGAAGCGAAGGAGATGCCCTGTAAGCATAAATTTCATAGTGACTGCATTCTCTCGTGGCTAAATCTCCATAGTTCTTGTCCAGTTTGCAGGTTTCAGTTGCCGTCTGATGATTCGAAGACTGAAACCAGTTTTGAACATAGAAATGAAGGCAATTCGAATAATGATCAAGACAGAGGTACAGAAGAGAGAATGAGTTACGGAAGAAGAAATTGGCTTTCCTTATTGCAGCCATTTGATAATTTTCTTCCTTCTCCTTGA 969 0.4334 MENGMEGGQWCNICSNMVNPMTEDENKCPICETEFSEVMGSPRDHNDGIDLGSAFVFSLYAPILIGLMSTISPSLGSITSQEHSSSSGSREEGEVEQETEHELVLRRRRRTTTSPMLVFRRLRDRMVSASENPENNRNVNLNVIVIDPFNEEALILRDPSNLNQARNPTENLVSSFGDFLIGPGLDLLLEHLAQNDPNRYVYVNPPAQKAAIEAMPSVTTNENLQCTVCLEDIEIGSEAKEMPCKHKFHSDCILSWLNLHSSCPVCRFQLPSDDSKTETSFEHRNEGNSNNDQDRGTEERMSYGRRNWLSLLQPFDNFLPSP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2156 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 271 - -
Glsi12g2156 322 MobiDBLite consensus disorder prediction 87 103 - -
Glsi12g2156 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 273 IPR013083 -
Glsi12g2156 322 SMART ring_2 226 266 IPR001841 -
Glsi12g2156 322 MobiDBLite consensus disorder prediction 76 103 - -
Glsi12g2156 322 MobiDBLite consensus disorder prediction 276 300 - -
Glsi12g2156 322 FunFam E3 ubiquitin-protein ligase RING1-like 191 273 - -
Glsi12g2156 322 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Glsi12g2156 322 SUPERFAMILY RING/U-box 214 273 - -
Glsi12g2156 322 Pfam Ring finger domain 225 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2156 Glsi-ChrGlsi12 36419348 36420316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2156 143 288 C3H Transcription Factor Family AT1G26800 34.694 3.67e-23 93.6