Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2154 ATGTATAATCATCAGCAACAGCGGGCAAAGAACATCCACTCTTTAAGGATGCCCAACCCTCCAGAGAGGCATATGCTCGTCCAAGGTGGTAATGGAACTGGAGACTTAGGACTAGTCCTCTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTCCATGAACGGTTTGTAGAAGCAGTCAATCAGCTAGGAGGACCAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGGATTCCTGGACTTACACTATACCACTTGAAGAGTCACCTACAGAAGTACAGACTCAGTAAAAATCTGCATGGACAGACCAATAGTGGCACCAATAAAAATGAATGTGGAAGTGAATTCATCTCACTGGCTCAAATTGCAGAAGTAGGCAGAATATCTGAAGAAAGTGGGATTCATATGAAAAATTTAAGCATCGAGCACCAGACAAACAAAAATGTAGAAATAAATGAGGCACTACAGGTGCAAATTGAAGTGCAAAGAAGGCTACATGATCAGCTTGAGGTACAGCGACACTTGCAGCTTCGTATAGAGGCTCAAGGTAAGTACCTCCAAGGAGTGCTGGAAAAAGCCCAAGATACGCTTAAAAGGCAACACTTAGGCACAGTGGGACTAGAAGCTGCCAAAGTTCAACTCTCTGAACTGGCATCCAAAGTATCAACTCAATGCCTAGATTCTGCATTTTCAGAGCTGAGAGAATTACAGGTATTATGCCCTCAGCAAACACAAGTGACCAAAACCACCGATTGTTCAATGGATAGATGCCTAGCCTCCTGTGAAGAATCCCAAAGAGACCAAGAGACACATAATCAGGGCTTGAGTTTGGGAGCCTATAATGGAAATCCATTTTTAATTTCAAAAGAGGTTGCCGAAGAGGCTTTGTTTCTGAAGTCTGATCTCACAATGTGTGATCGTCTGCAGGAGAAAATGATGTTTCTTTCCCCATCGAATGATGATGCAGAAAAAAACTCTAGCCTCATTTCCATGAATGTAGGACTTAAAGGAGAAGAAAGTTTTGGGATACCGCCTGTTTTGAAGGAAGATATAAAGGAAGAAAGCTGGATGAGAAGGGAGAGAACTGAAAAGGGGGATTTTCCAGCCAAACTGAATCACAAGAAAAATTCTCAAGATTACAGTTTGTCTAACTGGGAAACGAAACTGGACCTAAATACCCACAATGAAAGTGATGCTTCTTCCCGCTGCCAACAGTTAGACTTGAATGGTTTTAGCTGGAATTGCTAG 1260 0.4222 MYNHQQQRAKNIHSLRMPNPPERHMLVQGGNGTGDLGLVLSTDAKPRLKWTPDLHERFVEAVNQLGGPDKATPKTVLKLMGIPGLTLYHLKSHLQKYRLSKNLHGQTNSGTNKNECGSEFISLAQIAEVGRISEESGIHMKNLSIEHQTNKNVEINEALQVQIEVQRRLHDQLEVQRHLQLRIEAQGKYLQGVLEKAQDTLKRQHLGTVGLEAAKVQLSELASKVSTQCLDSAFSELRELQVLCPQQTQVTKTTDCSMDRCLASCEESQRDQETHNQGLSLGAYNGNPFLISKEVAEEALFLKSDLTMCDRLQEKMMFLSPSNDDAEKNSSLISMNVGLKGEESFGIPPVLKEDIKEESWMRRERTEKGDFPAKLNHKKNSQDYSLSNWETKLDLNTHNESDASSRCQQLDLNGFSWNC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2154 419 Gene3D - 44 102 - -
Glsi12g2154 419 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Glsi12g2154 419 MobiDBLite consensus disorder prediction 1 20 - -
Glsi12g2154 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Glsi12g2154 419 Pfam MYB-CC type transfactor, LHEQLE motif 154 199 IPR025756 -
Glsi12g2154 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Glsi12g2154 419 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Glsi12g2154 419 FunFam Myb family transcription factor 44 102 - -
Glsi12g2154 419 Coils Coil 156 176 - -
Glsi12g2154 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 22 301 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2154 Glsi-ChrGlsi12 36407822 36409866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2154 77 418 G2-like Transcription Factor Family AT3G04030 47.714 1.68e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi12g2154 Myb_DNA-binding 4.1e-09 CL0123