Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2152 ATGATATTTCATTCTTTTTCCGGGACAAGCTTCAAGCTTTCTTTTGGATATGGAATTTCACCATTAGCCATTTCAAGAGTTTTCACTAGTCCAACTGTCTCAACCTACGAAACAGTGTTTGGTTTGAGGATGAAGGATCCCCCTCATACTAATCTTCGTATTGCTGCGCTTTACGTTGAGCCGGTGGTTGTGAACAAAGCAGAAGAAGCTCTGGATTTGCCTCCTGGTTTCAGATTCCATCCGACGGATGAGGAGATAATCACTTCTTATCTGACAGAGAAGGTGATGAATAGCAGTTTCAGTGCATGTGCTGTTGGCGAAGCTGATTTCAACAAGTGTGAACCTTGGGATTTGCCCCAGAAAGCCAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAGAGATAGAAAGTATCCAACAGGCATGAGAACAAATCGAGCAACCCAGTCCGGGTACTGGAAGGCCACCGGAAAAGATAGAGAGATTTACAAAGGGAGAGGCAACCTCGTGGGGATGAAAAAGACCCTTGTGTTCTATAGAGGAAGAGCTCCAAAAGGGGAGAAAACTAATTGGGTTATGCATGAATTCAGATTGGAAGGAAAATTTGCTACTTACAGCCTCCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACACAGATGTTAAAAAGACCTCAACTCCGGAGCTTTTGAGGATCAACTCTCTTGGCGATGATCTCTTCGATTATTCTTCACTCCCGCCTCTCATGGATCCTCTTTTTAGTAACACCGACAAGCCGGCGGCCTATAGCGACGATGAATTCAAGGGGGCTAATCTATCAGACGGCTATTATCTTCCCAACTTCTCCATCAACAATAATCAGCTGCTGATGAAACCAGAAGACCAAACAGACTATGAGATGCTCCCCAATTACTACTCCACCAACAGCCACAACCTAGCGAATTTCAGTTCGCAACCTCAAATTCGAATCCAAAATCCCAGTTTCTCCCTTCAGCAGAATGCGTTCTCAGATTGTATGCACCAAGTTAGGCACACTAGTTCAGGTCTAGGGGGCAATGATCAGGCTACTGGAAGAGCTTTCGCAGTCAAGAATGAATACACATCCGGAATAGGATATCATAAACAGTGCAAGATGGAGCAGTTGTCGTCTAACCATTCTGTGGTGAGTGTCTCGCAAGACACCAGCCTCAGCAACGACAGAAACACCGAAACTTCCTCGGCGGCTTCGAAGCAAGACATGGGAAGGAATAATACGCCACTGTTTGAGGATCTTGAGGGTCCATCAGTTGGCCCCCTTTCAGATTTGGAATGCTTGTGGGATGACTACTGA 1350 0.4578 MIFHSFSGTSFKLSFGYGISPLAISRVFTSPTVSTYETVFGLRMKDPPHTNLRIAALYVEPVVVNKAEEALDLPPGFRFHPTDEEIITSYLTEKVMNSSFSACAVGEADFNKCEPWDLPQKAKMGEKEWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDREIYKGRGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATYSLPKAAKDEWVVCRVFHKNTDVKKTSTPELLRINSLGDDLFDYSSLPPLMDPLFSNTDKPAAYSDDEFKGANLSDGYYLPNFSINNNQLLMKPEDQTDYEMLPNYYSTNSHNLANFSSQPQIRIQNPSFSLQQNAFSDCMHQVRHTSSGLGGNDQATGRAFAVKNEYTSGIGYHKQCKMEQLSSNHSVVSVSQDTSLSNDRNTETSSAASKQDMGRNNTPLFEDLEGPSVGPLSDLECLWDDY 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2152 449 Pfam No apical meristem (NAM) protein 74 199 IPR003441 GO:0003677|GO:0006355
Glsi12g2152 449 FunFam NAC domain-containing protein 100-like 82 228 - -
Glsi12g2152 449 MobiDBLite consensus disorder prediction 390 433 - -
Glsi12g2152 449 Gene3D NAC domain 82 229 IPR036093 GO:0003677|GO:0006355
Glsi12g2152 449 SUPERFAMILY NAC domain 68 225 IPR036093 GO:0003677|GO:0006355
Glsi12g2152 449 MobiDBLite consensus disorder prediction 390 423 - -
Glsi12g2152 449 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 72 372 - -
Glsi12g2152 449 ProSiteProfiles NAC domain profile. 73 224 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2152 Glsi-ChrGlsi12 36375278 36384687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2152 54 431 NAC Transcription Factor Family AT5G18270 51.378 2.05e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g2152 NAM 9.9e-39 No_clan