Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2146 ATGACCAAATCATTCGCCAGCTATGTGGATTTGAAGAAAGCCGCCATGAAAGATGTGGATCTGGAAGCTGGTCTTCCCCCTAACGGCATAGAACTGAGCTCTTCAACAACCCACCTGGATACTGACATGGGTCTCTTCCTGGAAGAGGCAGAGAAAGTGAAAACAGAGATGGGTTATCTCCATGAAATACTGGACAGGCTTCACCAAGCGAATGAAGAGAGTAAGTCCCTACACAAGACTGAGGCCCTGAAATCCTTAAGGAACAGGATCAATGCTGACATTGTGAGCGTGCTCAAGAAGGCTAGGACGATCCAGTCTCAGCTGGAAGAAATGGACAGAGCCAATGCTGCTAATAGGAGGCTTTCTGAGCTCAAAGAAGGCACCCCAGCAATTTACAGGACCCGAATCGCTGTCACCAATGGACTGCGCAAGAAACTGAAGGAGACTATGATGGAGTTTCAGGGACTGAGGCAAAGGATGATGACTGAGTACAAAGACACGATCGGAAGACGCTATTTTACAGTAACAGGGGCATACCCAAATGAAGAGGTCATTGAGAAGATCATCTCCAATGGAGGCGAGGAGGAGTTCTTAAGCAAGGCTATACAAGAGCACGGTAGGGGAAAGGTCCTAGAGACGGTGGCGGAGATACAGGACAGGCACGATGCTGCTAAAGAGATTGAGAAGAGTCTGCTAGAGCTGCACCAGGTGTTTCTGGATATGGCTGTGATGGTAGAGGCACAGGGTGAAAAGATGGATGACATTGAGCACCACGTGCTTCATGCTTCCCACTATGTCAAGGATGGCACTAAGAATCTGCAGACTGCAAAGAAATACCAGAAGAGCAACAGGAAGTGGATGTGTTTTGGATTGATACTTCTCCTCATTCTAATTCTCTTAATTGTCATCCCCATTGCCACCAGTTTCAGCAGTTCTTAA 939 0.475 MTKSFASYVDLKKAAMKDVDLEAGLPPNGIELSSSTTHLDTDMGLFLEEAEKVKTEMGYLHEILDRLHQANEESKSLHKTEALKSLRNRINADIVSVLKKARTIQSQLEEMDRANAANRRLSELKEGTPAIYRTRIAVTNGLRKKLKETMMEFQGLRQRMMTEYKDTIGRRYFTVTGAYPNEEVIEKIISNGGEEEFLSKAIQEHGRGKVLETVAEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQKSNRKWMCFGLILLLILILLIVIPIATSFSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2146 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Glsi12g2146 312 Gene3D - 209 309 - -
Glsi12g2146 312 Pfam SNARE domain 251 302 IPR000727 -
Glsi12g2146 312 FunFam Syntaxin 132 207 307 - -
Glsi12g2146 312 Coils Coil 104 124 - -
Glsi12g2146 312 Gene3D - 43 171 - -
Glsi12g2146 312 Pfam Syntaxin 46 249 IPR006011 GO:0016020
Glsi12g2146 312 CDD SNARE_syntaxin1-like 213 275 - -
Glsi12g2146 312 CDD SynN 43 201 IPR006011 GO:0016020
Glsi12g2146 312 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 40 171 - -
Glsi12g2146 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi12g2146 312 SMART tSNARE_6 209 276 IPR000727 -
Glsi12g2146 312 PANTHER SYNTAXIN 55 298 IPR045242 -
Glsi12g2146 312 SUPERFAMILY t-snare proteins 41 269 IPR010989 GO:0016020|GO:0016192
Glsi12g2146 312 SMART SynN_4 38 165 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2146 Glsi-ChrGlsi12 36344361 36345299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2146 1 312 SNARE and Associated Proteins AT1G08560 66.879 1.08e-136 388