Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2128 ATGAGTTTTCAAGATATTCAAGGTGGGGGCAAGCGACCCGGTGGTCTAATCCAGTCGCCGTCGCAGGCGGTGGCTTCCGGGATTTTCCAGATCAATACTTCCGTCGCTACTTTCCGACGACTCGTCGATGTAATTGGAACCGTTAAAGACACTCCGGAGCACCGTCTGAAGCTGCACAATGCGAGGAAGGGGATATTGCAGCTGGTGAAGGATACTTCTGCTAAGCTCAAGTCCTTGAGCGAATCTGATCGTGATGCAGATTCTAATCCTAGTAAGAAAATTGAAGATGCTAAGCTGGCGAGAGACTTCCAAACCACATTGCAAGAGTTTCAGAAAGTACAACAACTTGCTTCTGAGCGGGAGTCTAATTACACTCCAGCTCCCCCTCCTCCTTCTTCTTTACCATCAAGCTCTGGCTCTGGTGAAGAATCGTTTGACAAAGATCAGGAAAGCCAACCTTTTATCAGGGAGCAGAAGAGGCAGGAGATACTTTTGTTGGATAATGAAATCACCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGCATTAGAGAGGTAGAGGAGCAAATAGGACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTTATGAGCAGGGTGTGGTTATTGATGACGTTCAATCAAATATCGATGCTTCTGCTGGTGCAACAACCCAAGCAAAGACTCAGCTAGCCAAGGCTTCCAAGAGTGTGAAATCTAGATGCTCATGGTGTTGGTGGGTGCTTATAATATTTGTGTTGGTGCTGGTTATCTTGCTTATTGTTCTGATTATTTAA 804 0.454 MSFQDIQGGGKRPGGLIQSPSQAVASGIFQINTSVATFRRLVDVIGTVKDTPEHRLKLHNARKGILQLVKDTSAKLKSLSESDRDADSNPSKKIEDAKLARDFQTTLQEFQKVQQLASERESNYTPAPPPPSSLPSSSGSGEESFDKDQESQPFIREQKRQEILLLDNEITFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVYEQGVVIDDVQSNIDASAGATTQAKTQLAKASKSVKSRCSWCWWVLIIFVLVLVILLIVLII 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2128 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Glsi12g2128 267 SMART tSNARE_6 169 236 IPR000727 -
Glsi12g2128 267 Pfam SNARE domain 211 262 IPR000727 -
Glsi12g2128 267 PANTHER SYNTAXIN 23 256 IPR045242 -
Glsi12g2128 267 MobiDBLite consensus disorder prediction 77 96 - -
Glsi12g2128 267 Gene3D - 168 267 - -
Glsi12g2128 267 FunFam Syntaxin-22 like 167 267 - -
Glsi12g2128 267 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Glsi12g2128 267 MobiDBLite consensus disorder prediction 114 153 - -
Glsi12g2128 267 Gene3D - 16 127 - -
Glsi12g2128 267 SMART SynN_4 8 122 IPR006011 GO:0016020
Glsi12g2128 267 CDD SNARE_Qa 177 235 - -
Glsi12g2128 267 FunFam Syntaxin-22 like 15 128 - -
Glsi12g2128 267 SUPERFAMILY t-snare proteins 19 229 IPR010989 GO:0016020|GO:0016192
Glsi12g2128 267 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2128 Glsi-ChrGlsi12 36262719 36264792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2128 1 254 SNARE and Associated Proteins AT5G46860 60.078 1.60e-99 290