Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2120 ATGTCAACGACTCTTGCGGCAATAGTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTGGGAATTGTTATAGCACTCATATGGTTCTGCCTATTTAACAGGAGGAGTCTCTCAAGGACTTCGGAGACAGGGTCCTCCGATCCTTCCCAAGTGGGAAGGCATGGTGGGATTGAGTTTACATTACGAGATACTAGGCGGTTCGAAATGGAAGAACTATCTCTAGCTACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCATGATGGTATGCTTGTAGCCATCAAAAAGCGGCGGGGACTTCCTAGCCAGGAATTTGTTGACGAGGTCCGCTACCTGACGTCCATCCAACATCGGAATCTTGTAACACTTTTGGGTTACTGCCAGGAACACAATCTACAGTTTCTTATATACGAATATGTGCCAAATGGGAGCGTCTCCAGTCACTTCTATGATGCTAGTCAACAATCGCATGAGAAGCTAGAATTCAAGCATAGACTTTCAATAACTCTAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCCTGAGTCCTCGTTTGGTGCATAAGAATTTCAAAACGGCGAATGTTCTAGTGGATGAAAATTTCATTGCTAAGGTTGCAGATGCAGGACTTCGTAATTTCCTGGGAAGAGCTGATATTGCAGGCCCATCTTCTCAAGTGGCAGCGGATGAGATATTCCTTGCTCCGGAGGTTAGAGAGTTCAGGCGATTTTCCGAAAAGAGTGATGTTTACAGTTTTGGGGTATTTTTGCTGGAACTGTTAAGCGGGAAGGAAGCAACAGAATCACCAACGTCAGACTCTAATCAGAATCTAGTTGAATGGGTGCAAAGTAATGAAGACCATCGCATTATGTCAAACGTTATTGATCAGAGATTGGGGAGTAGATTCACAGCCGAAGGAATGGAAGAATTTATCTTGTTGATAGTTCGATGTTTAGATCCTTCAAGTGAGAGGCGACCTGCCATGAGCTATGTTGTAATGGAACTCGAACGGATTCTTGAGAAAGAAATGAACTTGACAACAATCATGGGTGAAGGCACCCCAACTGTGACACTTGGAAGTCAGTTATTCAAAGCAACGAGATCATCGACTTTGTCTCCAGCGTCTGCTCCGGTCCCCAATCTGCCTGCTTCTCCCCAAGAGCACACTCCCGCCGCCAGCACTCAGTCCTCACCCGCTCCAAATGTCTCTCGCGAATTCAGTCTCGCCGTACAGGCCAACTCCTACAACGAGATTCGATCCAAGATACAAATCTTTGACCCCAGTAGAATCGATCCTCCGCCAGACCAAGCTCACCTTGTTGATGGGTATGCTGATGGAGATTCCCACCGGCAACTCCTGGCAGAGGTGCTTCATCCTGACCGAGAATGCGTCCAAGAGACACTTGAACAAGCCAGGCCTAACACTCTGACTCGCCTTGTCTCTACCTACTTCGACCATAGCGAGACCACTTCTGAACTCTGCCTCGGGGTTCATCGAAGCGTCCATCGTGCACGTACCATGTATGCTCCTCTTCTTGACCTTCTCGCTGTTCTTCCCTCTGATTCCAACGGCCTCTCTCAATCCCAGTGTGACCATGCCTTCGACATTTTCCTCAATTTCGATAGCCAAGGCAATCCTTTTTTTTCCCCCGATTCCCATAACTTCAGCAATATGCGCAGCTGCTTTTCTGATCTTAAGCAAGAACTTGATGGCAGTCTCCGAAAGTCTCGCTCCAGGGTACGCCTTTTCCGTTGGGCCACAACTGGCTCTGCCCTTTGCTTCATTGCCACCGCCGTGGGAGTCATTGTAACTGCCGTTGTTGTCACGACCCATGCAATCGGAGCCATTGCTGCTGCTCCCGTTTGCCCTGCATATATCCCTCATCCGAAGACCACCAAAAAGAAGGAACTTGCCCGATTAGCGCAGCTTGATGCTGCCGCCAAGGGTACTTATGTTCTGAACAAGGATCTTGATACAATTGATCGCCTTGTTGCTCGTCTGTATTTTGCAGTTGAAGGTGACAAGCTTCTTATTCGCCTTGGTTTGGAGAGGGGGAAGGACAGGTATGCCATCCAGGAGGTGCTCAAGCAGCTTCGCCGGAACCTTCAAAATTTTCTCCACCATCTTGAGGATCTTGAGGAACATATATACCTCTGCTTCAACACTGTTAACAAGACCAGATCGTCGCTCTTCCAAGAACTACGTAGTTCCTAA 2250 0.4769 MSTTLAAIVGGAAGAVALVGIVIALIWFCLFNRRSLSRTSETGSSDPSQVGRHGGIEFTLRDTRRFEMEELSLATKSFSDKNLIGEGKFGEVYKGLLHDGMLVAIKKRRGLPSQEFVDEVRYLTSIQHRNLVTLLGYCQEHNLQFLIYEYVPNGSVSSHFYDASQQSHEKLEFKHRLSITLGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGRADIAGPSSQVAADEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEATESPTSDSNQNLVEWVQSNEDHRIMSNVIDQRLGSRFTAEGMEEFILLIVRCLDPSSERRPAMSYVVMELERILEKEMNLTTIMGEGTPTVTLGSQLFKATRSSTLSPASAPVPNLPASPQEHTPAASTQSSPAPNVSREFSLAVQANSYNEIRSKIQIFDPSRIDPPPDQAHLVDGYADGDSHRQLLAEVLHPDRECVQETLEQARPNTLTRLVSTYFDHSETTSELCLGVHRSVHRARTMYAPLLDLLAVLPSDSNGLSQSQCDHAFDIFLNFDSQGNPFFSPDSHNFSNMRSCFSDLKQELDGSLRKSRSRVRLFRWATTGSALCFIATAVGVIVTAVVVTTHAIGAIAAAPVCPAYIPHPKTTKKKELARLAQLDAAAKGTYVLNKDLDTIDRLVARLYFAVEGDKLLIRLGLERGKDRYAIQEVLKQLRRNLQNFLHHLEDLEEHIYLCFNTVNKTRSSLFQELRSS 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2120 749 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
Glsi12g2120 749 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 357 IPR047117 -
Glsi12g2120 749 Pfam Protein tyrosine and serine/threonine kinase 82 347 IPR001245 GO:0004672|GO:0006468
Glsi12g2120 749 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2120 749 Coils Coil 707 727 - -
Glsi12g2120 749 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Glsi12g2120 749 MobiDBLite consensus disorder prediction 380 414 - -
Glsi12g2120 749 SUPERFAMILY Protein kinase-like (PK-like) 63 360 IPR011009 -
Glsi12g2120 749 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Glsi12g2120 749 FunFam Protein kinase superfamily protein 151 364 - -
Glsi12g2120 749 Pfam Protein of unknown function (DUF677) 486 744 IPR007749 -
Glsi12g2120 749 MobiDBLite consensus disorder prediction 398 414 - -
Glsi12g2120 749 FunFam Protein kinase superfamily protein 43 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2120 Glsi-ChrGlsi12 36196903 36202879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2120 8 352 Receptor kinase-like Gene Family AT1G79620 34.844 1.73e-57 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Glsi12g2120 DUF677 9.1e-17 CL0133