Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2118 ATGGCTCTACTTAGATGTCTGCTTCTTCTGCCCTTCGTATTTTTCTTCACCGCCAATAACTCAAAAGCTCTCGCTACTACGATTCCTAGCGACGCATTGTCCCTTCTCAGCTTCAAGGACTCGGTCTCGTCCGACCCTTATAACCTTCTCTCTGGCTGGAGCAACCACCCTTCCAGCAACCACTGCCTCTGGCACGGCGTCACCTGTAACGAGAGGCTCTCCGGCAGAGTTATTGCCTTGAACTTAATCGGACTTAATGGCGGCAAGCTAACACCTTCAATTGGAGACATGGGTGAACTTCGGATTTTGTCCATTCCCCACAATATGTTTTCTGGTGAGATCCCAGTGAGTCTAGTGAAGCTTCAGCTGCTGGAGGTTCTTGAGCTTCAAGGAAACAACTTCTCGGGGAGGATCCCCAGCCAGATAAGCTATCTTCATTCTCTTCGCCTTCTTAACCTCTCTAATAATTTTTTCTCGGCTTCGATACCCACTAATTTGTTTGGCTCTGGAAATGTAAGCGTCGTTGATTTCTCAAATAATCAGCTTTCTGGTCCCATTATAGTGGATGGTTTGAGTGGGTGTGATTCCTTGAATCATTTGAGACTCTCCCACAACTTCCTTACTGGTGAAATACCGTCCCAAATCGGGAAATGCCAAAACTTGAGGACCCTTTTACTCGATGGGAATGTCTTGGAAGGTAGAATCCCTCCCGAGATTGGACATATCAGGGAACTCAGAATTCTAGATCTTTCTAAAAATAGTCTCACTGAAAGGATCCCAAAAGAGCTAGCTAATTGCCAGAAATTGTCTGTGCTTGTGTTGACTGATTTATTCGATGATCAGACTCCTGCTGACGGAACCTTGGTGGATAGCTTTAGAGGAGAATTCAATGCCTTTGTGGGAAATATTCCTCCTCAAGTGTTGTTGCTTTCACGTTTGCAGATTTTGTGGGCACCAAGAGCGAATCTTGGTGGAAGGTTGCCCAGTGGCTGGACAGATTCATGCTCGCTGAGAGTACTCAACTTGGCACAGAATTATATTACCGGGGTGATACCAGAAGCTTTGGGGATTTGTAGAAATTTAACTTTTTTGGATTTGAGTTCCAACAATTTAGTGGGGCACCTCCCATCAAAACAGCTTCAGGTTCCATGTATGATGTACCTTAATGTCAGCCGGAATAATATATCTGGCATAATATCAGGTTTTGGGAACGAAAGCTGTGATATAAGCAGCACCTTTGCTATGCTAGACCCCAAGTTCCTAGACGTAGAAGATCCTAGTAATGCATACTTTAACCTTCCTCTTTGGGAATCGCAGATAAGCGCTCTCTTTAGATCAGGTTCAGAAGAGACTATTGTCATAAGCCATGATTTTAGTTGGAATAGCTTCAAGGGATCTTTACCTTCATTCTTGTTGGGGGATAATCTTTTTGCAATGAATCGCAAGGTCTCCTACATGCTATTACTAAATAATAATAACTTTAATGGAACTCTACCATATATTCTAGTTTCAAACTGTAATGATCTCAAGGCGTTATCAGTTAACCTGAGTGTGAACCAATTATCAAGTGGGAATTCCCAAGGTTTGCTTCTGCACTGTCAGCAGTTGACAGAGTTTGAAGCAGCATACAACCAAATTGGAGGGTCAATTGGACCTGTTATAGGTGACTGGATGATGCTTCAACGTCTTGATTTGAGGGGTAACAAACTATCTGGATCTCTGCCTGACCGGTTAGGAAACCTGAAAAACATGAAATGGATGCTTCTAGGAGGAAATAATCTAACAGGGAAAATCCCTTCTCAACTTGGTCAATTGACTTCCCTTGCTGTGTTGGATCTATCTTACAATGTTATTACTGGAATAATTCCTGCAACTTTGACAAATGCCACAAGTCTAGAAATTCTGTTGCTAGATCATAACAAACTTTCTGGGGAAATACCTTCATCTTTTTCTACTCTTCCCACTCTTATGAAAATTGATGTTTCTTTCAATAACCTCTCCGGTCATATTCCCCATCTTCAACACCCAAGTGATTGTGATTCCTATAGAGGGAATGAACACCTGCATTCTTGCCCTGATCCATACTCTGCCTCACCTGCTTATCTTCCAGTCCCTCTTGAAGTCCAAAATCGGCACAGACAGAGAACATTGAAGACAATGATAATTGCTGTGGTAACTTCTGCTTCTGTAGTTCTGTGTGTACTCCTGGGAATAATATTGGTGATCACTCTCGGAAGGAACAAGTTTGGTCATCTTAGCAGTCTTAGAAGGAGACTAGTAGTGACCTTTCAAGATGTTCCAACTGAATTAAGTTATGTCAATGTGGTCATAGCTACTGGAAATTTCAGCATCCGAAATCTAATTGGCACCGGCGGGTTTGGGTCTACTTACAAGGCAGAACTGTCCCCAGGTTTCCTTGTTGCCATAAAGAGGTTGTCTATTGGCAGATTTCAAGGCATTCAACAGTTTGAAACAGAGATAAGGACATTAGGGAGAATTAGACACGAGAACCTTGTGACTCTAATTGGTTATTATGTAGGAGAGGCTGAAATGTTCTTGATATACAACTACCTTTCTGGTGGGAACCTTGAAGCTTTCATACACGACAGGTCAGGCAAAAATGTGCAGTGGCCAATTATTTACAACATAGCAAAAAATATAGCAGATGCCATTGCTTACCTTCATTATTCTTGTGTTCCTCGCATAGTCCACCGGGATATCAAGCCTAGCAACATCTTACTTGACGAGGATCTTAATGCCTACTTGTCAGATTTTGGCTTGGCTAGACTTCTCGAGGTATCCGAGACCCATGCTACTACTGATGTGGCAGGCACATTTGGCTATGTGGCACCTGAATATGCCACCACTTGCAGGGTTTCTGACAAGGCAGATGTTTACAGCTTTGGTGTTGTGTTATTAGAATTGATGTCGGGAAGAAAGTCACTAGACCCATCATTTTCTAACTATGGCAATGGATTTAACATTGTACCGTGGGCCAAGTTGCTACTGACAGAAGGTCGTTCTTCTGAGCTATTCTTAGCTGCTTTATGGGAAGCAGGGCCAAAGGAAAAGTTGTTGGGACTTTTACGGCTTGCATTAACCTGCACAGTAGAAACTCTATCTGTTCGGCCATCAATGAAGCAGGTTCTTGAGAATTTGAAACAACTCAAAAGTTGA 3177 0.4271 MALLRCLLLLPFVFFFTANNSKALATTIPSDALSLLSFKDSVSSDPYNLLSGWSNHPSSNHCLWHGVTCNERLSGRVIALNLIGLNGGKLTPSIGDMGELRILSIPHNMFSGEIPVSLVKLQLLEVLELQGNNFSGRIPSQISYLHSLRLLNLSNNFFSASIPTNLFGSGNVSVVDFSNNQLSGPIIVDGLSGCDSLNHLRLSHNFLTGEIPSQIGKCQNLRTLLLDGNVLEGRIPPEIGHIRELRILDLSKNSLTERIPKELANCQKLSVLVLTDLFDDQTPADGTLVDSFRGEFNAFVGNIPPQVLLLSRLQILWAPRANLGGRLPSGWTDSCSLRVLNLAQNYITGVIPEALGICRNLTFLDLSSNNLVGHLPSKQLQVPCMMYLNVSRNNISGIISGFGNESCDISSTFAMLDPKFLDVEDPSNAYFNLPLWESQISALFRSGSEETIVISHDFSWNSFKGSLPSFLLGDNLFAMNRKVSYMLLLNNNNFNGTLPYILVSNCNDLKALSVNLSVNQLSSGNSQGLLLHCQQLTEFEAAYNQIGGSIGPVIGDWMMLQRLDLRGNKLSGSLPDRLGNLKNMKWMLLGGNNLTGKIPSQLGQLTSLAVLDLSYNVITGIIPATLTNATSLEILLLDHNKLSGEIPSSFSTLPTLMKIDVSFNNLSGHIPHLQHPSDCDSYRGNEHLHSCPDPYSASPAYLPVPLEVQNRHRQRTLKTMIIAVVTSASVVLCVLLGIILVITLGRNKFGHLSSLRRRLVVTFQDVPTELSYVNVVIATGNFSIRNLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHENLVTLIGYYVGEAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPIIYNIAKNIADAIAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSNYGNGFNIVPWAKLLLTEGRSSELFLAALWEAGPKEKLLGLLRLALTCTVETLSVRPSMKQVLENLKQLKS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2118 1058 SUPERFAMILY L domain-like 486 595 - -
Glsi12g2118 1058 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 858 1058 - -
Glsi12g2118 1058 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Glsi12g2118 1058 ProSiteProfiles Protein kinase domain profile. 782 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2118 1058 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 445 699 - -
Glsi12g2118 1058 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 231 1055 - -
Glsi12g2118 1058 CDD STKc_IRAK 788 1056 - -
Glsi12g2118 1058 Gene3D Transferase(Phosphotransferase) domain 1 858 1057 - -
Glsi12g2118 1058 Pfam Protein kinase domain 784 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2118 1058 Gene3D Ribonuclease Inhibitor 290 426 IPR032675 -
Glsi12g2118 1058 Gene3D Ribonuclease Inhibitor 86 277 IPR032675 -
Glsi12g2118 1058 Gene3D Ribonuclease Inhibitor 432 691 IPR032675 -
Glsi12g2118 1058 Gene3D Ribonuclease Inhibitor 26 85 IPR032675 -
Glsi12g2118 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Glsi12g2118 1058 Pfam Leucine rich repeat 584 642 IPR001611 GO:0005515
Glsi12g2118 1058 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 278 - -
Glsi12g2118 1058 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 746 857 - -
Glsi12g2118 1058 FunFam Leucine-rich repeat receptor-like protein kinase 28 188 - -
Glsi12g2118 1058 SMART LRR_typ_2 605 628 IPR003591 -
Glsi12g2118 1058 SMART LRR_typ_2 242 266 IPR003591 -
Glsi12g2118 1058 SMART LRR_typ_2 145 169 IPR003591 -
Glsi12g2118 1058 SUPERFAMILY Protein kinase-like (PK-like) 760 1053 IPR011009 -
Glsi12g2118 1058 Gene3D Phosphorylase Kinase; domain 1 747 857 - -
Glsi12g2118 1058 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Glsi12g2118 1058 SUPERFAMILY L domain-like 93 677 - -
Glsi12g2118 1058 SMART serkin_6 782 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2118 Glsi-ChrGlsi12 36187926 36191102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2118 30 1057 Receptor kinase-like Gene Family AT3G02130 43.521 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Glsi12g2118 Pkinase 6.7e-42 CL0016