Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2112 ATGAATTTGGCTGCAGATTCAATGTATCGCCACCTACACTTGTTTCTAGGCTCTAAGTATGGACAAGCAAGCAAGCCCAGTAAATTTTATCCGGGAGAAAGAGGCCATATAATTAAGAATAGAAGAAGCAGTAAAAGAGAGTTGAACAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTCCTTTCTGATCATGCGTCAGAGGAGAAAACGGAAGATTTCGTCTTTCCTGTTTACCCATCACCCTCTGAAACCCAAAAGGAAGAAACTTCTTCACCCTCTCCCTTCTCATATCTAATCAGCACCACTGATACTACCTTCTCAATCCCAATATTACCACAGGGGCAACTAAGCAACTCTCCTGGCTTGATAGGGAAGCAGGACCCATCCCAGCCTATGCATCGAGGTAATTTGAGGAAGCGAAACTATAGAGGTGTGAGGCAGAGACCGTGGGGCAAATGGGCAGCCGAAATCCGAGACCCTAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTTGACACGGCAGAGGATGCAGCCGCTGCTTATGATGCTGCAGCCTTGAAGTTCAAAGGAAACAAAGCCAAGCTTAATTTTCCCGAACGGGTTGCTTTGCCAACCAACCTCCCTCCTCCACCTAATGCTTCTGCACAAAGCCAGGCTGCTCCTACTACACTACCATCTGAGGCGGCACAAGCCGTTTCTCTAGTATCTCAGCCTCTGGCAGCGCCCTCTTTGACCGACGAAGGGTTCCCAAACCTCTTGCAGTACGCGCAGCTGCTTTCTGGTAATGATGATGATCTACAACGTGCTGCGTCGGGACTTTATTATGATCACAGTGAGCCATTTCTTTATGATTCTTTATTCTTCTCATCAACAATGCCTTCGTCCACTTCTATGTCTGTTTCTGATCAACAGCAGGTTGAAGATGCCCAGAAAGCGCAAAAGGGAAACTATTATGGTTCTTCTGGTTCTTATTTTTTTGATAAAGAGAGTGATTTTGATGATAGGAACGCGAGGGGATAG 1020 0.4686 MNLAADSMYRHLHLFLGSKYGQASKPSKFYPGERGHIIKNRRSSKRELNKVDRRHGKRPLLSDHASEEKTEDFVFPVYPSPSETQKEETSSPSPFSYLISTTDTTFSIPILPQGQLSNSPGLIGKQDPSQPMHRGNLRKRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVALPTNLPPPPNASAQSQAAPTTLPSEAAQAVSLVSQPLAAPSLTDEGFPNLLQYAQLLSGNDDDLQRAASGLYYDHSEPFLYDSLFFSSTMPSSTSMSVSDQQQVEDAQKAQKGNYYGSSGSYFFDKESDFDDRNARG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2112 339 SMART rav1_2 141 204 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 MobiDBLite consensus disorder prediction 297 339 - -
Glsi12g2112 339 MobiDBLite consensus disorder prediction 25 93 - -
Glsi12g2112 339 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Glsi12g2112 339 CDD AP2 141 199 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 ProSiteProfiles AP2/ERF domain profile. 141 198 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 MobiDBLite consensus disorder prediction 32 71 - -
Glsi12g2112 339 Gene3D AP2/ERF domain 140 200 IPR036955 GO:0003700|GO:0006355
Glsi12g2112 339 MobiDBLite consensus disorder prediction 297 320 - -
Glsi12g2112 339 PANTHER DNA-BINDING DOMAIN 91 293 IPR044808 GO:0003700|GO:0009873
Glsi12g2112 339 Pfam AP2 domain 141 190 IPR001471 GO:0003700|GO:0006355
Glsi12g2112 339 FunFam Ethylene-responsive transcription factor 2 140 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2112 Glsi-ChrGlsi12 36146589 36148626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2112 55 206 AP2-EREBP Transcription Factor Family AT5G61890 51.852 3.19e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g2112 AP2 1.6e-14 CL0081