Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2107 ATGCCACCAAGAGCTCACGGCGTCCCTTGGATGGAAGGAGAAGTTGAAGACTCAGCCTCTTGGACCAGAACTAACAACGAGAGTGAGCTCAAGGACCAGGACATTGCCATGGTTGGCCCTCTAACCTCCTTCAAATCCATGCTTGAAGGTGACTGGTACACGACTTCTGGTATCAATTTATCTCACCAGGACCTCCCCAGTCTCCCGAATCACCAAGAAACCAGAGATATTGGCCTTTGTTCAAACCCAACTGATAATTTTCTGATACACCCCGTGGATTCGTCTTCTTCTTGTTCGCCGTCATTCACTCTTGACCCATCGCAGTCGCAGCTTTTTTTACAACCCAAATCGTGCTTCTCTTCTCTCTTCAATGTTGCTTGCAACAGCCCTTTTGACAATGGCCTCGATTTGGGCTCTGAAAGCGGGTTTCTCGGTCCGTTCCAGGGAAATCATTCGTCGACTTCCCATGTTTTGATGGGCTTCTCAGGCTTCCATCCTCAATTTCACATGGACAACCTCGAACTGAGTTCGAACTCCGAGTTTCCAGCGACTCGAGTGCTGTCAGTAGCTGACAATGCCGTCGCACTGGGTGGCGGATTTTGTCCGACGGGTTTAGAAGGTTTTGGTAATTCGGGAGATGCTCTGTTTTTGAACCGGGCTAAGGTTTTAAGACCTCTTGAAGTTTTCCCTCCTACGGGTGCGGCACCTACTCTCTTTCAGAAGCGAGCGGCGCTTCGCCAAAGCTCCGGGGGAGCTGATAAATTGGGAACTTTGGAGATTTCAGCATCGAGATTCGAGGATTGTTCAACAAGGATGGAGAACATGGAGAGGAAGAGGGAGAAAATAGAAGACGGCGACATTGAGGAAGCTAGCATCGACGCGTCAGGGTTGAATTATGACTCTGATGAGCTCAATGAGAATGGTAAGGTGGAGGAGAATGCTTATAATGGGGGAAGCAATTCTAATCCAAATAGTACTGTCACAGGTGGAGACCAGAAGGGGAAGAAAAAGGGGCTACCAGCGAAAAATCTAATGGCCGAGAGGCGGCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCCGTTGTGCCAAAGATTAGCAAGATGGATAGGGCGTCGATACTTGGGGATGCAATTGACTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAGTTGGAGTCACCTCCGCTAGGCTCATTGCCGCCCCCTCCTACAAGCTTTCACCCTTTGACACCCACTCCACCGACCCTTCCCTGCCGGGTCAAGGAAGAACTATGCCCTCGCTCCTTGCCAAGCCCTAAAAATCAACCTGCAAGGGTGGAGGTTCAAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGCGCTTTGGACAATCTTGGATTGGATGTTCAGCAGGCTGTCATCAGTTGCTTTAATGGCTTTGCTTTGGATGTGTTCAGAGCCGAGCAATGCAGAGAAGGGCAGGATGTTGTCCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCGGCGGGTTTCCATGGTATGATGTGA 1590 0.4937 MPPRAHGVPWMEGEVEDSASWTRTNNESELKDQDIAMVGPLTSFKSMLEGDWYTTSGINLSHQDLPSLPNHQETRDIGLCSNPTDNFLIHPVDSSSSCSPSFTLDPSQSQLFLQPKSCFSSLFNVACNSPFDNGLDLGSESGFLGPFQGNHSSTSHVLMGFSGFHPQFHMDNLELSSNSEFPATRVLSVADNAVALGGGFCPTGLEGFGNSGDALFLNRAKVLRPLEVFPPTGAAPTLFQKRAALRQSSGGADKLGTLEISASRFEDCSTRMENMERKREKIEDGDIEEASIDASGLNYDSDELNENGKVEENAYNGGSNSNPNSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESPPLGSLPPPPTSFHPLTPTPPTLPCRVKEELCPRSLPSPKNQPARVEVQVREGRAVNIHMFCARRPGLLLSTMSALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVVPEQIKAVLLDSAGFHGMM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2107 529 MobiDBLite consensus disorder prediction 1 26 - -
Glsi12g2107 529 CDD bHLH_AtAMS_like 341 399 - -
Glsi12g2107 529 Gene3D - 332 401 IPR036638 GO:0046983
Glsi12g2107 529 SMART finulus 344 393 IPR011598 GO:0046983
Glsi12g2107 529 MobiDBLite consensus disorder prediction 335 350 - -
Glsi12g2107 529 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 220 525 - -
Glsi12g2107 529 MobiDBLite consensus disorder prediction 310 350 - -
Glsi12g2107 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 409 IPR036638 GO:0046983
Glsi12g2107 529 MobiDBLite consensus disorder prediction 312 331 - -
Glsi12g2107 529 FunFam BHLH transcription factor 334 402 - -
Glsi12g2107 529 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Glsi12g2107 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2107 Glsi-ChrGlsi12 36105011 36109202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2107 42 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 58.985 9.39e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g2107 HLH 2.2e-09 No_clan