LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g2107	ATGCCACCAAGAGCTCACGGCGTCCCTTGGATGGAAGGAGAAGTTGAAGACTCAGCCTCTTGGACCAGAACTAACAACGAGAGTGAGCTCAAGGACCAGGACATTGCCATGGTTGGCCCTCTAACCTCCTTCAAATCCATGCTTGAAGGTGACTGGTACACGACTTCTGGTATCAATTTATCTCACCAGGACCTCCCCAGTCTCCCGAATCACCAAGAAACCAGAGATATTGGCCTTTGTTCAAACCCAACTGATAATTTTCTGATACACCCCGTGGATTCGTCTTCTTCTTGTTCGCCGTCATTCACTCTTGACCCATCGCAGTCGCAGCTTTTTTTACAACCCAAATCGTGCTTCTCTTCTCTCTTCAATGTTGCTTGCAACAGCCCTTTTGACAATGGCCTCGATTTGGGCTCTGAAAGCGGGTTTCTCGGTCCGTTCCAGGGAAATCATTCGTCGACTTCCCATGTTTTGATGGGCTTCTCAGGCTTCCATCCTCAATTTCACATGGACAACCTCGAACTGAGTTCGAACTCCGAGTTTCCAGCGACTCGAGTGCTGTCAGTAGCTGACAATGCCGTCGCACTGGGTGGCGGATTTTGTCCGACGGGTTTAGAAGGTTTTGGTAATTCGGGAGATGCTCTGTTTTTGAACCGGGCTAAGGTTTTAAGACCTCTTGAAGTTTTCCCTCCTACGGGTGCGGCACCTACTCTCTTTCAGAAGCGAGCGGCGCTTCGCCAAAGCTCCGGGGGAGCTGATAAATTGGGAACTTTGGAGATTTCAGCATCGAGATTCGAGGATTGTTCAACAAGGATGGAGAACATGGAGAGGAAGAGGGAGAAAATAGAAGACGGCGACATTGAGGAAGCTAGCATCGACGCGTCAGGGTTGAATTATGACTCTGATGAGCTCAATGAGAATGGTAAGGTGGAGGAGAATGCTTATAATGGGGGAAGCAATTCTAATCCAAATAGTACTGTCACAGGTGGAGACCAGAAGGGGAAGAAAAAGGGGCTACCAGCGAAAAATCTAATGGCCGAGAGGCGGCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCCGTTGTGCCAAAGATTAGCAAGATGGATAGGGCGTCGATACTTGGGGATGCAATTGACTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAGTTGGAGTCACCTCCGCTAGGCTCATTGCCGCCCCCTCCTACAAGCTTTCACCCTTTGACACCCACTCCACCGACCCTTCCCTGCCGGGTCAAGGAAGAACTATGCCCTCGCTCCTTGCCAAGCCCTAAAAATCAACCTGCAAGGGTGGAGGTTCAAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGCGCTTTGGACAATCTTGGATTGGATGTTCAGCAGGCTGTCATCAGTTGCTTTAATGGCTTTGCTTTGGATGTGTTCAGAGCCGAGCAATGCAGAGAAGGGCAGGATGTTGTCCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCGGCGGGTTTCCATGGTATGATGTGA	1590	0.4937	MPPRAHGVPWMEGEVEDSASWTRTNNESELKDQDIAMVGPLTSFKSMLEGDWYTTSGINLSHQDLPSLPNHQETRDIGLCSNPTDNFLIHPVDSSSSCSPSFTLDPSQSQLFLQPKSCFSSLFNVACNSPFDNGLDLGSESGFLGPFQGNHSSTSHVLMGFSGFHPQFHMDNLELSSNSEFPATRVLSVADNAVALGGGFCPTGLEGFGNSGDALFLNRAKVLRPLEVFPPTGAAPTLFQKRAALRQSSGGADKLGTLEISASRFEDCSTRMENMERKREKIEDGDIEEASIDASGLNYDSDELNENGKVEENAYNGGSNSNPNSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESPPLGSLPPPPTSFHPLTPTPPTLPCRVKEELCPRSLPSPKNQPARVEVQVREGRAVNIHMFCARRPGLLLSTMSALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVVPEQIKAVLLDSAGFHGMM	529

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g2107	529	MobiDBLite	consensus disorder prediction	1	26	-	-
	Glsi12g2107	529	CDD	bHLH_AtAMS_like	341	399	-	-
	Glsi12g2107	529	Gene3D	-	332	401	IPR036638	GO:0046983
	Glsi12g2107	529	SMART	finulus	344	393	IPR011598	GO:0046983
	Glsi12g2107	529	MobiDBLite	consensus disorder prediction	335	350	-	-
	Glsi12g2107	529	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	220	525	-	-
	Glsi12g2107	529	MobiDBLite	consensus disorder prediction	310	350	-	-
	Glsi12g2107	529	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	341	409	IPR036638	GO:0046983
	Glsi12g2107	529	MobiDBLite	consensus disorder prediction	312	331	-	-
	Glsi12g2107	529	FunFam	BHLH transcription factor	334	402	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g2107	Glsi-ChrGlsi12	36105011	36109202	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g2107	42	502	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G26744	58.985	9.39e-154	446

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Glsi12g2107		HLH	2.2e-09	No_clan

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