Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2098 ATGGCGACCAGGTACTGGGTAGTCTCTCTTCCCGTCCAAAATTCCGCATCTGCTCTCTGGAACCGATTGCAGGAACAAATCTCCAAGCATTCATTCGATACTCCTCTTTACAGATTCAATATACCTAATCTCCGCGTTGGAACCCTAGATTCTCTCCTTTCCCTCAGCGATGATCTCGTGAAGTCGAACAGTTTCATTGAAGGAGTGTCACACAAGATCAGGCGACAGATTGAGGAATTGGAGAGAGTGTCGGGCGTTGTGAGCAGTGGCCTGACAGTTGATGGGGTGCCTGTTGATTCATACTTGACCAGGTTTGTTTGGGATGAAGCAAAGTACCCTACTATGTCACCTTTGAAGGAGATCGTGGATGGTATTCATGGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGCGTTGCTGAGTATAGCAATATCCGTAGTCAGCTAAATGCTATCAACCGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAACCTGGTAAAACCAGAGGATATTATAACTTCAGAACATTTAACTACCCTCCTTGCAGTTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACAAGCTATGTGGTACCCAGGTCTTCCAAGATGCTGTATGAGGATAATGAGTATGCTCTTTATACTGTAACACTCTTCAGCCGTGTTGCAGACAATTTCAGAACTAGTGCCCGTGAAAAAGGGTTCCAAATTCGTGATTTTGAGTACAATCCAGAAACACATGACAGTCTGAAGCAGGAGTTAGAGAAATTAATGCAAGATCAGGAAAGTTTGAGAGGAAGTCTGTTGCAATGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATCTGTTTTAGCTCCATCGGCAAAAAGTGAGAAGAAAGTACGTTCTATACTTGAAGGATTGAGTGATAGTGCAAACAGTGCATACTGGAAGGTCGAAGAAGAAGCAGGAGGCATGGCTGGTCTAGTAAGTGATGCTGATGCTCACCCGTATGTGTCCTTCACTATCAATCTCGCATGA 1128 0.4433 MATRYWVVSLPVQNSASALWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFIEGVSHKIRRQIEELERVSGVVSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVAEYSNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLAVVPKYSQKDWLSSYETLTSYVVPRSSKMLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYNPETHDSLKQELEKLMQDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLASVLAPSAKSEKKVRSILEGLSDSANSAYWKVEEEAGGMAGLVSDADAHPYVSFTINLA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2098 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi12g2098 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi12g2098 375 Gene3D Vacuolar atp synthase subunit c; domain 1 6 334 - -
Glsi12g2098 375 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Glsi12g2098 375 Coils Coil 257 277 - -
Glsi12g2098 375 Gene3D - 41 312 - -
Glsi12g2098 375 Gene3D - 163 251 - -
Glsi12g2098 375 FunFam V-type proton ATPase subunit C 163 251 - -
Glsi12g2098 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2098 Glsi-ChrGlsi12 36071679 36076634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2098 1 375 Primary Pumps ATPases(2) AT1G12840 83.200 0.0 660
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2098 12 36071679 36076634 Glsi12g2098 12 36071679 36076634 ECH