Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2089 ATGGAGTTGCCCTGTGACTTTTGCTATTCAAAAATGGCGGTGCTGTTCTGTAAAGCTGACTCAGCGAAGCTCTGTTTATTGTGTGATCAACACGTTCACTCGGCCAATGCTCTGTCACTCAAGCACGTTCGTTTTAAGATTTGCGACTCTTGCAAAAACGAAACGGCTACCATTCGGTGCTCAACCGACAATCTTATGCTATGCCAAAACTGTGATTGGCACGCCCACAATAACTGTTCGGCTTCCCCCTTTCATGAGCGCACCCCAGCTGAAGGCTTATCTGGCTGCCCCTCCATGATTGAGCTTGCCTCAGTACTTGGGTTAGATTTGGAACCGAAAGATTTGTTCAACATGGGTTATGAATCTTGTCCCCTTGAGCAGAAAGTCAAGGATTTTCAGGGATCTGTAGTCCCAAATTTCCATTCCTCTGTTTCTTCCGCCTTGTCTAAAGGTCAGAATTTGATCTGTGGAAACAATAAGGATGAGGAGTATGTGCAAATAATGGAAATGGCGAGGAGAAATTTAGCTAAAGTAGATGGAGTTGAACTGAGTCCCGGAACACCACCGAGTAGGCGTGTTCAGGAGGGGGATGTGGAGAATGTTGCATTGAACAATGTGAAGGAGAATGACTTGCTGCAGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTATCAGATGATATGGACATTAGAAAAAACGATTACGGAAGTGAAGAAGATGGTCCGTGGGATTGTACCCCCGCATATCGGGCTGCCCAGGTATGGGATTTTCAATCAGGAAAATCAAGAGATTGCGGAGAACCAAAATTAGTGACATTTGTTGGTCTAGAAGAAGCTTCCTTATCCATAACAAAATCATTCCAAGATTTATGCAATATGAATTGCTCGACAATTGGAGTTGATATTCTGTCAAGAAATGACCAATCAGATCAGTCATCATCGAACCACGTGATGAAGAAAGAAGAAAGCAACAAGAATGGTAGAGGTGGATTATCATCAGAGTCCAAGTTAATTGAAAGTGACAGCGGAAAGGTCACAGTCATGGAGAATGTTGCGGGTAGGAGTGAAAAGGGAAGCTCTATGATAGCCAAAGTTAGCTTAGAAGAGATAGCAAAAAATAGAGGCCATGCCATGCTACGCTACAAGGAGAAGAAGAAAACACGAAGATATGATAGGCAGATTCGGTATGAATCAAGGAAAGCGGGGGCTGATGTGAGAAAACGGGTGAAAGGGAGCCTCTCATCACGAAATGGGAAAACCGGAGTAACCTATTTTATGATTGATAAAGCATCAAATTCAACTGATCCAAAATTCAACGAAGCAGAGACTTCTACGCCTTCGCCATGATGTTATGCTTGGAAAAACTCCTCAACCAAAACAATGGGGTGCACTTACTCTGCATACGCACTTGGAAAGAAGAAGAAGACGATTACCCCCGAAGTGGTGGTCTTTGTACCATCAATCCGATTTCCAGTACAATCTGATCTTCAGAGGCCGCTTAGAGGGATAATTCCAAGGGATCTTGCTGACAAATTATCTTCTCTTCGGAATCAGATAGTGTTAGTGGCAGAGGATACCGGTGGATCTGCAATAGCAGAATTGCGGCGAGCTTTGAGTGAATACTTGTCTGTTCTCATTGGGCTCACTAAGAAAGAGTATAGATTAGAGGGACTGATAGAATTCAAGTGGAAAAATTTCCAGGAAGGGCGACAAGATAGCTGTGTAGCAAATGTTTGGTTAGAGGTGCTATCTGCAATTCACCTTATGGCTATGCTGACATTGTCAGAGGCTGACTCGTTATTGATTCCCAAGGACCATTCGGGTTCTGGAACTAGAGTTGTATCTTCAGATAGCAAAAGGGAAGCAGTGGATTTGTTACTAAAGGCATCAGCATACCTGCAATTTTGTGTCAGAGATGTTCTTACTCGGATACCACCTGAAATCAAGAAAACTCTACCCCACGACTTGCAGGATGGTGTATTGGAGGCTATATCCATTCAAGCACTAGGCGAGGGAACGGAAATTCAGCTTGGCCTTGCTGTTGAAAGCCAGAACGCAACATTGTCAGTGAAGAGGAGGTTGGCATGTGAACAACTGGTTTACTTTAGTCAGGCTTATCAGTGCTTGTTAGGATGTGGCTTCAGCCAAGGGTATGGAAAGAAGCATCTTCGGTTCATCAAGTGGAAATTCCTTGAAGCCAAGGCCGCAGCCTACTACTACCATGGGCTGATCCTTGACAAGGACAATGAACCGACCAGTCACATTGGTGCTGTGTCTTGTTTTCTAGCCGCAGAAGAACTTGTAGCTGAGAGCAGGAAGGCCTGCTTAAGCTTCTGCATTGCAACCCCAGTGACCAGGGTTGCTCCACTCTGGGGTGCTATGAAACATTTATATCAGAAAATTCCCGAAGTGGCATCAAGGAAGTCTCAGATGTATGGCTACCTCTTGGAACAAGAGAAGAGTCTCCAAACATTGCCTGAGTTACCTGATTTTCAACTGTCATTACGTCCAGATGACTATGAACTGCCTGAAATAGATCCAGCGTGGGATAGTGTGAACTGGGAAACTCTTGGACAGCCCTTGAAAGAGCATCTTAGAGATTGTGAAGATGATATTCCAACAGAATGA 2628 0.4437 MELPCDFCYSKMAVLFCKADSAKLCLLCDQHVHSANALSLKHVRFKICDSCKNETATIRCSTDNLMLCQNCDWHAHNNCSASPFHERTPAEGLSGCPSMIELASVLGLDLEPKDLFNMGYESCPLEQKVKDFQGSVVPNFHSSVSSALSKGQNLICGNNKDEEYVQIMEMARRNLAKVDGVELSPGTPPSRRVQEGDVENVALNNVKENDLLQQQTPFTSLLMLSDDMDIRKNDYGSEEDGPWDCTPAYRAAQVWDFQSGKSRDCGEPKLVTFVGLEEASLSITKSFQDLCNMNCSTIGVDILSRNDQSDQSSSNHVMKKEESNKNGRGGLSSESKLIESDSGKVTVMENVAGRSEKGSSMIAKVSLEEIAKNRGHAMLRYKEKKKTRRYDRQIRYESRKAGADVRKRVKGSLSSRNGKTGVTYFMIDKASNSTDPKFNEAETSTPSPXCYAWKNSSTKTMGCTYSAYALGKKKKTITPEVVVFVPSIRFPVQSDLQRPLRGIIPRDLADKLSSLRNQIVLVAEDTGGSAIAELRRALSEYLSVLIGLTKKEYRLEGLIEFKWKNFQEGRQDSCVANVWLEVLSAIHLMAMLTLSEADSLLIPKDHSGSGTRVVSSDSKREAVDLLLKASAYLQFCVRDVLTRIPPEIKKTLPHDLQDGVLEAISIQALGEGTEIQLGLAVESQNATLSVKRRLACEQLVYFSQAYQCLLGCGFSQGYGKKHLRFIKWKFLEAKAAAYYYHGLILDKDNEPTSHIGAVSCFLAAEELVAESRKACLSFCIATPVTRVAPLWGAMKHLYQKIPEVASRKSQMYGYLLEQEKSLQTLPELPDFQLSLRPDDYELPEIDPAWDSVNWETLGQPLKEHLRDCEDDIPTE 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2089 875 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Glsi12g2089 875 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi12g2089 875 PANTHER UNCHARACTERIZED 461 856 IPR038898 -
Glsi12g2089 875 Pfam CCT motif 374 411 IPR010402 GO:0005515
Glsi12g2089 875 MobiDBLite consensus disorder prediction 306 339 - -
Glsi12g2089 875 Gene3D alix/aip1 like domains 502 858 IPR038499 -
Glsi12g2089 875 CDD Bbox1_BBX-like 4 45 - -
Glsi12g2089 875 CDD BRO1_Alix_like 471 838 - -
Glsi12g2089 875 SMART BRO1_2 482 845 IPR004328 -
Glsi12g2089 875 ProSiteProfiles BRO1 domain profile. 466 875 IPR004328 -
Glsi12g2089 875 SMART bboxneu5 48 90 IPR000315 GO:0008270
Glsi12g2089 875 SMART bboxneu5 1 47 IPR000315 GO:0008270
Glsi12g2089 875 ProSiteProfiles CCT domain profile. 374 416 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2089 Glsi-ChrGlsi12 36026691 36033636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2089 3 413 C2C2-CO-like Transcription Factor Family AT2G33500 35.731 6.19e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi12g2089 CCT 1.9e-11 CL0281