Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2086 ATGGCAGACCCGGCCATGTACGACTTCCTAAACCAGCCCTCTGCTTCAAAAACAGCAAAGAAATCACTGCTGCGCTCTCCTTCCTCCGCTCGCACATTCCAATGCCGTTACTGCCCTCGCAAGTTCTATACCTCCCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGAGAGAGAGCCGCTGCTCGCACTGTCATTCCTACCCAGCATCCCCTGCGTAACGAGCCCTTACCCGAACAGGAAGCTCCTCATTTCTTCGACCACTATTGGCTGGAACCCATGCACACCCACCACCACCTTCCGACTCCTGCTCCTCTTCCCTTTCATGGCATTCCCACCCCTCAAGTTCCAGGACCTGATGCTGCTGTTGACCACGTAAATCTTGACCTCACCCTACGCTTATGA 405 0.558 MADPAMYDFLNQPSASKTAKKSLLRSPSSARTFQCRYCPRKFYTSQALGGHQNAHKRERAAARTVIPTQHPLRNEPLPEQEAPHFFDHYWLEPMHTHHHLPTPAPLPFHGIPTPQVPGPDAAVDHVNLDLTLRL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2086 134 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Glsi12g2086 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Glsi12g2086 134 Gene3D Classic Zinc Finger 12 82 - -
Glsi12g2086 134 SUPERFAMILY beta-beta-alpha zinc fingers 30 60 IPR036236 -
Glsi12g2086 134 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 77 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2086 Glsi-ChrGlsi12 36007820 36008224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2086 27 63 C2H2 Transcription Factor Family AT5G14010 86.486 9.08e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g2086 None None None