Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2082 ATGGAGAAGCTCCCAAGCTTTGTCGTCAATGGAGGCATCAAGTTGCCTATTGGGTACAGGTTCTGTCCCACCGATGAAGAGCTTGTCATTCACTACCTCAAGAGGAAGGCCTCTGCTCAGCCATTACCAGCTTCAGTCATTCCTGAATTTGATGTGTTCCACACTGAGCCTTGGTGGCTCCCAGGTGTCGGTGATTCCAAAGAAAAGAGGTATTTTTTTAGCCACAGAAAGGACCATGTCTATGGAAACATGAGCAAGAGAGCTGCTGGTTGTGGGTACTGGAAATCTATTGGCAAAGACAAACAAATTGTAGCTTCTGAGAGGAATCAACTGGTTGGGATGAGAAAAACTCTGGTTTTCTGTGAAGGGAAACGTTCCCATGAGACCAGAACTCAGTGGGTCATGCATGAATTGCGTCTTCTTGGCTCTGAAACAGCCTCCTATCCATTTCAGATGCCAGTGGCAGACTGGGCTGTGTATCGCATATTTCAAAAGAGAAAGCTCAAGAGAAAAAGGTGTAATGGGCAGCACTCTAACAGCAGAAAAGTTCAGAGATTAGAGGAGATTAAACCCAGTTTCATAGATTTCGCAGTGGAACATGGCAGTGATGCAGGTCCTCCCCCACCCTGTTCCCCATGTTTTAGTGAAGGCAGTGAAAAAGCTTATGCTTTGAAAGATTATGATGATGAAAACCAAAGGCATGCAAGAGGAAAAAGGAAAGGTATTTTTGTAGTTAAGGTTGGGGACATGAGTGAGATGCGGACCAAAGTTTCTTGCAGCAAACTCAGAGGTCTTCCTTATTCGCTAGCTTCTGTTACAACCTTACCCCGTAACCTTCGTTGCATCCATCGTTTTCTTTCTGTACCAACGAATCTGGTTCTTCTTTATACCTTCTTTCCGCTAATTGCAAACAAGCTTTTCATCGGCCTCTTTCTCTTGCCTGAAGCCTTCCTTCCTCTCAATCTCTCCCCATTTCCATTCTTCTCCTCCATCATGGGTTGCGGCATGTCAACTTTGGACGATGAAAATGCAACCCTGCGTCGCTATTCCAGCATCCTCCGTCGACACAGTATTGTTCGCCCAGTTACGGACAACAACTCACCCACCAAGAAGCTCTCTGACAATGGTGGCGATGAGAGGGTAATTGAGAATGGAGGAGAAAAGGAAGTGCGAGTGAAAGGGGCTGCAGAGAAAGAGCAGAGTGGCAATGGCGAACTTGAAAAGAATGGAGAAAATGAGCAAGTGGCTTATCAATGTGAATATCTCATTGCTCCAAGGTCCCCAAGTTTTAGGGATTATTGCGTCGACTCGGACTCTGGGGATCAAAGCTTTAGGGAGCATTTCAATGACACCGACTCAGCCGAAAGCACTAAGAATGGGAGTGTTGAGGCTTCAGCAAAGAGGAATGATAAGCCAGGGGAAAACAAGGACTCTAAGAAGAAAGAGAGAAGGAGACTTCGATTTAGGAATGCTATAAATAAGGGAATGCCAAAAGGGAAGAGGAATCTTCTGAACTTCGGCTGCTACACTTCATGCCATGCATCCTATGATGATAATACTCTCAAGAAAGTAGTTGAAAAATCTGCACGATGA 1593 0.4532 MEKLPSFVVNGGIKLPIGYRFCPTDEELVIHYLKRKASAQPLPASVIPEFDVFHTEPWWLPGVGDSKEKRYFFSHRKDHVYGNMSKRAAGCGYWKSIGKDKQIVASERNQLVGMRKTLVFCEGKRSHETRTQWVMHELRLLGSETASYPFQMPVADWAVYRIFQKRKLKRKRCNGQHSNSRKVQRLEEIKPSFIDFAVEHGSDAGPPPPCSPCFSEGSEKAYALKDYDDENQRHARGKRKGIFVVKVGDMSEMRTKVSCSKLRGLPYSLASVTTLPRNLRCIHRFLSVPTNLVLLYTFFPLIANKLFIGLFLLPEAFLPLNLSPFPFFSSIMGCGMSTLDDENATLRRYSSILRRHSIVRPVTDNNSPTKKLSDNGGDERVIENGGEKEVRVKGAAEKEQSGNGELEKNGENEQVAYQCEYLIAPRSPSFRDYCVDSDSGDQSFREHFNDTDSAESTKNGSVEASAKRNDKPGENKDSKKKERRRLRFRNAINKGMPKGKRNLLNFGCYTSCHASYDDNTLKKVVEKSAR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2082 530 MobiDBLite consensus disorder prediction 362 411 - -
Glsi12g2082 530 MobiDBLite consensus disorder prediction 441 483 - -
Glsi12g2082 530 Gene3D NAC domain 24 170 IPR036093 GO:0003677|GO:0006355
Glsi12g2082 530 MobiDBLite consensus disorder prediction 464 481 - -
Glsi12g2082 530 ProSiteProfiles NAC domain profile. 15 165 IPR003441 GO:0003677|GO:0006355
Glsi12g2082 530 SUPERFAMILY NAC domain 11 165 IPR036093 GO:0003677|GO:0006355
Glsi12g2082 530 MobiDBLite consensus disorder prediction 373 406 - -
Glsi12g2082 530 PANTHER NAC TRANSCRIPTION FACTOR 56 15 203 - -
Glsi12g2082 530 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2082 Glsi-ChrGlsi12 35978576 35983800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2082 7 171 NAC Transcription Factor Family AT5G13180 51.807 1.15e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g2082 NAM 1.8e-29 No_clan