Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2068 ATGCAGCAAAAAGCGCTCTGCTGTCCGATTTTGGATAGTTCCGCATCACCGGCAGCTATGGCTCCAAAAAGAGGTGGAAAAACTCCAGTTGCAGCTGCTAAGAAGAAGGCGGAGAAGGTGGTGAACCCATTATTCGAGAAACGTCCGAAGCAGTTTGGCATAGGAGGGGCATTGCCTCCAAAAAGGGATCTGACCCGATTCGTTAAGTGGCCCAAGACCGTTCAAATTCAGAGAAAGAAGAGGATACTCAAGCAAAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAAACACTTGACAAGAACCTTGCAACAAGCCTCTTCAAGATGCTCCTTAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGCCTTTTGAAGAGGGCTCAGGCTGAGGCAGAAGGAAAATCTGTCGAAACTAAGAAGCCGATTGTTGTGAAATATGGTCTCAATCACGTTACATACCTTATTGAGCAGAATAAAGCTCAGCTGGTTGTGATTGCCCATGATGTGGACCCGATTGAACTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCCTACTGCATAGTCAAGGGCAAGGCACGATTGGGATCGATTGTCCATAAGAAAACTGCGTCGGTTCTGTGCTTGACAACTGTCAAGAATGAAGACAAATTAGAATTCTCCAAGATATTAGAGGCTATCAAGGCCAACTTCAACGATAAGTATGATGAGTACAGAAAGAAGTGGGGTGGAGGGATTATGGGTTCCAAATCCCAAGCCAAAACCAAGGCCAAGGAAAGGCTTCTTGCCAAGGAAGCTGCACAGAGGATGTCCTAG 837 0.4648 MQQKALCCPILDSSASPAAMAPKRGGKTPVAAAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKSVETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2068 278 Coils Coil 121 141 - -
Glsi12g2068 278 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 138 225 IPR004038 -
Glsi12g2068 278 FunFam 60S ribosomal protein L7a 70 253 - -
Glsi12g2068 278 SUPERFAMILY L30e-like 110 243 IPR029064 -
Glsi12g2068 278 ProSitePatterns Ribosomal protein L7Ae signature. 186 203 IPR004037 GO:0042254|GO:1990904
Glsi12g2068 278 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 62 261 - -
Glsi12g2068 278 Gene3D - 70 253 IPR029064 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A/RS6 family signature 167 180 IPR018492 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A/RS6 family signature 183 193 IPR018492 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A/RS6 family signature 193 207 IPR018492 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A/RS6 family signature 148 162 IPR018492 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 110 123 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 86 105 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 66 83 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 205 229 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 144 164 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 49 66 IPR001921 -
Glsi12g2068 278 PRINTS Ribosomal protein L7A family signature 237 257 IPR001921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2068 Glsi-ChrGlsi12 35894990 35897733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2068 20 278 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 1.15e-167 462