Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2067 ATGGTAGAGCGTAATCCAAAAATGATTGATGTTAGTTTTAATGCTGGAAGTTGCCATATTTCACCATCTCGCCACAACCCCACCACCTCACCAACTCCATTACGCCCTTCAACTTCGATAACCTCCTTCAAGTCTGCACCGTCCTTTACCAGTAGCAGAACTCGCCTAAGTCCAGACTCCACACCAAGCTCCAATCTTGCGAGTTCAATCTCACCCACAAGTTCTTCCTTCAGTCACACCTCTGTCTCCTTCAACAAGATGGTTGATGTTATTGGGAAGTTAAGAAACATCAATCTTTTTTGGGAAGTTCTGCAAGAGATGGGATGGCGTAGCTTTGTAAATGATAGGAGTTTTTTTATTGCTTTGAGAACTTTGGGTGCTGCGAGGGAGTTGAAGAAGTGCGTGGAGTTCTTCCACTTAATGAATTCCAATGGCTATAAATACAATTTGGGGACTCTAAATAAGATTAATTGGCATGATGAGGCTTTGAAGCTCTTTCGAACAAGGAGGGTGAAGAGGATGGATGATTTTGATCTTTCATCTTATAGGCTTGTGATCAAATGGATGTGTATGGCGGGATCAGCAGCTATGGCTCCAAAAAGGGGTGGAAAGGCTCCAGCTGCGGCTGCTAAGAAGAAGGCGGAGAAGGTAGTGAACCCACTATTCGAGAAGCGTCCGAAGCAGTTTGGGATCGGAGGGGCATTGCCTCCAAAGAGGGACCTGACCCGATTCGTGAAGTGGCCCAAGACGGTTCAGATTCAGAGAAAGAAGAGGATACTCAAGCAAAGGTTGAAGGTCCCACCAGCTTTAAATCAGTTCACCAAAACACTTGACAAGAACCTTGCAACAAGCCTGTTCAAGATGCTCCTTAAGTACAGGCCGGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAGAGGGCTCAGGCCGAGGCAGAAGGAAAATCTGTCGAGACTAAGAAGCCGATTGTTGTGAAATATGGTCTCAATCACGTTACATACCTTATTGAGCAGAATAAAGCACAGCTGGTTGTGATTGCTCATGATGTGGACCCAATTGAACTGGTTGTCTGGCTTCCAGCACTGTGCAGGAAGATGGAAATTCCCTACTGCATAGTCAAGGGCAAGGCACGATTGGGATCGATTGTCCATAAGAAAACTGCATCAGTTCTGTGCTTGACAACTGTCAAGAATGAAGACAAATTAGAATTCTCCAAGATATTAGAGGCTATCAAGGCCAACTTCAACGACAAGTATGATGAGTACAGAAAGAAGTGGGGTGGAGGGATTATGGGTTCCAAATCCCAAGCCAAAACCAAGGCTAAGGAAAGGCTCCTTGCCAAGGAAGCAGCGCAGAGGATGTCCTAG 1368 0.4547 MVERNPKMIDVSFNAGSCHISPSRHNPTTSPTPLRPSTSITSFKSAPSFTSSRTRLSPDSTPSSNLASSISPTSSSFSHTSVSFNKMVDVIGKLRNINLFWEVLQEMGWRSFVNDRSFFIALRTLGAARELKKCVEFFHLMNSNGYKYNLGTLNKINWHDEALKLFRTRRVKRMDDFDLSSYRLVIKWMCMAGSAAMAPKRGGKAPAAAAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAEKKERLLKRAQAEAEGKSVETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2067 455 FunFam 60S ribosomal protein L7a 247 430 - -
Glsi12g2067 455 Coils Coil 298 318 - -
Glsi12g2067 455 ProSitePatterns Ribosomal protein L7Ae signature. 363 380 IPR004037 GO:0042254|GO:1990904
Glsi12g2067 455 SUPERFAMILY L30e-like 287 420 IPR029064 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 226 243 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 382 406 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 287 300 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 321 341 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 414 434 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 243 260 IPR001921 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A family signature 263 282 IPR001921 -
Glsi12g2067 455 Gene3D - 247 430 IPR029064 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A/RS6 family signature 360 370 IPR018492 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A/RS6 family signature 344 357 IPR018492 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A/RS6 family signature 325 339 IPR018492 -
Glsi12g2067 455 PRINTS Ribosomal protein L7A/RS6 family signature 370 384 IPR018492 -
Glsi12g2067 455 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 239 438 - -
Glsi12g2067 455 Gene3D Tetratricopeptide repeat domain 71 220 IPR011990 GO:0005515
Glsi12g2067 455 MobiDBLite consensus disorder prediction 16 79 - -
Glsi12g2067 455 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 315 402 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2067 Glsi-ChrGlsi12 35879904 35894887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2067 197 455 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 2.70e-165 464