Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2058 ATGGCGAGCTCACCGTTAGGGTTGCGGATGCTTAAACCACCAATCGTCACCGCTCCCGCATCACGATTCAGCCCCGGGCATGCATTGTTGAAATTTCCTAGAATTCAACTTCCCAGAATCAACTGTGACTACTCCTGCTTTGAAGTTAGAGATGTTAGCTATCAGCCCCCTGGGACTCAGCTCAGCCTTTTGAAGTCAATTAGTTTTTCACTTCCTGAGAAAAGTTTTGGCTTAATTTTTGGACAGAGTGGAAGTGGGAAAACAACCCTCTTGCAGCTTCTTGCAGGAATAACCAAACCAACCTCTGGGTCCATTTACATCCAAAAATATGGGAATGATGGAAATCCAATTCAATCTCCACAACCCCTGGTACCAGAAAGGGTTGGTATCGTCTTCCAGTTTCCTGAGAGGTACTTTGTTGCTGATAATGTTCTTGATGAAGTCACTTTTGGGTGGCCAAGACAAAAGGGTGACTATCAATTAAAGGAACATCTTGCTTTAAGACTCCAGAGAGCAATTAATTGGGTTGGATTAAGTGGTATCTCCTTGGATAAAGATCCTCACTCCCTAAGTGGTGGTTACAAACGCCGCCTTGCCTTGGCAATACAATTGGTTCATATCCCCGACCTATTGATATTGGATGAGCCTCTTGCTGGTCTTGATTGGAAAGCACGAGCAGATGTTGTGAAGCTTTTGAAGCATCTGAAAAAGGAATTAACTGTGCTAGTTGTTAGCCACGATTTGAGAGAGTTAGTAAGTCTAGTTGATCGATCATGGAGGATGGAAATGGGTGGCAATCTTAGGGAGGAGTTACTATAA 819 0.4383 MASSPLGLRMLKPPIVTAPASRFSPGHALLKFPRIQLPRINCDYSCFEVRDVSYQPPGTQLSLLKSISFSLPEKSFGLIFGQSGSGKTTLLQLLAGITKPTSGSIYIQKYGNDGNPIQSPQPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGDYQLKEHLALRLQRAINWVGLSGISLDKDPHSLSGGYKRRLALAIQLVHIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLRELVSLVDRSWRMEMGGNLREELL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2058 272 SMART AAA_5 73 265 IPR003593 GO:0016887
Glsi12g2058 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 264 IPR027417 -
Glsi12g2058 272 Gene3D - 40 271 IPR027417 -
Glsi12g2058 272 Pfam ABC transporter 64 217 IPR003439 GO:0005524
Glsi12g2058 272 FunFam ABC transporter I family member 11 chloroplastic 36 272 - -
Glsi12g2058 272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 271 IPR003439 GO:0005524
Glsi12g2058 272 CDD ABC_cobalt_CbiO_domain1 48 264 IPR015856 GO:0005524|GO:0016020|GO:0055085
Glsi12g2058 272 PANTHER HEAVY METAL TRANSPORTER 48 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2058 Glsi-ChrGlsi12 35827221 35831250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2058 51 266 Calmodulin-binding Proteins AT2G36910 23.377 2.15e-07 50.1