LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g2056	ATGTTGTTCCCTTGTCCTTCTTCTTCAAGCTATTCGATTTCAACGAGTGCTATGGGAAGCTCTCTTCATGGTTTTAGCAATTTCGATGGTCAGAACTCAAATGGGTTCCTGGGTTTGAGACCCGCTGAAAGTGATCAGTTGCAGAAAAGAGCTGAAGCTAGAGATAGCCTATTATCTCAGAGTGGAAGCATTGTGACTGATTCGGGTAAAAAGAAGGGAGAGAAGAAGGTTAGGAAGCCTAGATATGCTTTCCAAACAAGGAGTCAGGTTGATATACTTGATGATGGCTATAGATGGAGAAAATATGGCCAAAAAGCTGTCAAAAACAACAAATTCCCCAGGAGCTACTACAGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAACGCCTGACCAAAGACGAGGGGGTTGTGGTGACCACTTATGAGGGAGTGCACACCCATCCTATCGAGAAGACAACTGACAACTTTGAGCACATTTTGAGCCAGATGCAAATCTACACTCCCTTTTGA	519	0.4451	MLFPCPSSSSYSISTSAMGSSLHGFSNFDGQNSNGFLGLRPAESDQLQKRAEARDSLLSQSGSIVTDSGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g2056	172	Gene3D	WRKY domain	78	152	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g2056	172	SUPERFAMILY	WRKY DNA-binding domain	85	152	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g2056	172	MobiDBLite	consensus disorder prediction	53	67	-	-
	Glsi12g2056	172	FunFam	WRKY transcription factor 57	79	153	-	-
	Glsi12g2056	172	MobiDBLite	consensus disorder prediction	48	81	-	-
	Glsi12g2056	172	Pfam	WRKY DNA -binding domain	94	151	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g2056	172	ProSiteProfiles	WRKY domain profile.	88	153	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g2056	172	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	24	155	IPR044810	GO:0003700
	Glsi12g2056	172	SMART	WRKY_cls	93	152	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g2056	Glsi-ChrGlsi12	35806855	35808409	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g2056	81	172	WRKY Transcription Factor Family	AT5G13080	88.043	3.85e-59	179

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi12g2056		WRKY	1.5e-26	CL0274