Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2055 ATGGACTGGGACTGGAAAGACATTGCGTGGGATTCATCCGAGTTGGAGCTATCAAATGATGGCACGGGAGGGCAGAAGAACGGAGCAGCTTCGGTGGATTTGAAGCTTGGTGAGACTTCTGATTTGATAGAAAAATCGACCGCACTCAAGAACCCAAGAGACTCGGAAACAGTGTCTTCACCTTCTGGGTCCTCAAAGAGGAGTCGAATGCAGAGGATCTTCGCTGAATTTTTTTGCTCGGTTGACGGATGCACTTCTGACCTTAGTGGTTGCAGAGAGTATCATCGGCGCCACCGGGTATGCGAAATGCATTCAAAAACTCCTGTTGTGTTGGTAGGGGGCAAGCAACAGCGATTCTGCCAACAATGCAGCAGATTTCATTCGCTGGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTCGAGGGGCACAATAGACGCAGAAGGAAACCTCAGCCACCATCTCTTTTCATGACGTCTGGGAAAATCCTGAGCAATTATAAAGGACCCAGAATTCTGCAATTTGGTAGTCCTCAAACATATGCCAACCCTCTCACGGCAAGTATGTGGCCTGCCACTGCCAAAACTGGAGCTGAATTCATGAGTTATGATTGGCATCGACCTTTACAGAGACTTGACCAACAAAGCTTGCCAAGTTCCTTTGCTAATGTTCAGCATCAACAGGATAAGCAACTTCCTTTCTTGCAGGCAAGTGGCCCCAAATTAGGCTACGGCAATGAAGCAGTGTCTGGAATTCCTGTAAGTCAGCCAATTTCTGTTGCCATTACCCCATCATCAAGTGGAGGAAAGGAAAGCCGAAAGTTCTCTTCTGATTGCAAACCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTCCAAACACAAAGTTCAGAGTTAAGTTTGGTGCAGTCAAGCATAACCTGTCCAATGCAATCTCCACTAGGAGATACGCATTTTGATGCTGTGAAAAAGTACTCATGCTCAGAAAGTCCAAAAGAAAAAGCTACTGCTCCAGTATTGGTTCTAGATGCGAACACAAGCAACCTTCGTTGCAACGGGGTGCTACGCATGAGGCCTGATGGATTGGTGGAAAATGGGGACTCGCCGACCCTTCCATTTTTCTGGGAGTAG 1149 0.4726 MDWDWKDIAWDSSELELSNDGTGGQKNGAASVDLKLGETSDLIEKSTALKNPRDSETVSSPSGSSKRSRMQRIFAEFFCSVDGCTSDLSGCREYHRRHRVCEMHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLEGHNRRRRKPQPPSLFMTSGKILSNYKGPRILQFGSPQTYANPLTASMWPATAKTGAEFMSYDWHRPLQRLDQQSLPSSFANVQHQQDKQLPFLQASGPKLGYGNEAVSGIPVSQPISVAITPSSSGGKESRKFSSDCKPGSFDSGCALYLLSTLQTQSSELSLVQSSITCPMQSPLGDTHFDAVKKYSCSESPKEKATAPVLVLDANTSNLRCNGVLRMRPDGLVENGDSPTLPFFWE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2055 382 SUPERFAMILY SBT domain 78 158 IPR036893 GO:0003677|GO:0005634
Glsi12g2055 382 Gene3D - 75 140 IPR036893 GO:0003677|GO:0005634
Glsi12g2055 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 321 IPR044817 GO:0003677
Glsi12g2055 382 ProSiteProfiles Zinc finger SBP-type profile. 76 153 IPR004333 GO:0003677
Glsi12g2055 382 MobiDBLite consensus disorder prediction 143 162 - -
Glsi12g2055 382 MobiDBLite consensus disorder prediction 52 67 - -
Glsi12g2055 382 Pfam SBP domain 79 152 IPR004333 GO:0003677
Glsi12g2055 382 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2055 Glsi-ChrGlsi12 35791333 35793096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2055 78 238 SBP-box Gene Family AT5G50670 46.821 1.81e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi12g2055 SBP 8.5e-31 No_clan