Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2045 ATGGCCATGGATATGGAGGAAAAACAGCAATCAGGGTTTCTGTATTGGAAAGCCATTCCTCGCAGGTTCGGCCCGGACTCACCTTTCTTTGCTTCTGGCAACATCGAACGGGAACTTCTTGTTAAACAGGTTGCCTTGGAATTAACAGCAGAAGAGAAGCAACAACTTCAGAATTTGGTACAAGAGGAAGGCAGGGAAGTCTTCTGTCCCATTGTTGGTTGTGGAGCGCACTTGCAATCTCTGGAAGATTTTGAAAATCATTATAATGCACGGCATGCTGCCTCTTGTTCAGTGTGTTCTAGAGTCTACCCAACATCTCGCCTGCTCAGCATACATGTATCTGAAGCGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGATGTGTATGAATGCTTAGTGGAAGGCTGTGGTTTGAAGTTCAAAAACTACAAGAGTAGGCAACAGCATCTGGTTGACAAGCATAAATTCCCCACTTCATTTGAGTTTTTTAAGAAGGCTCGGCCATCAAAGAAACAGAGGCAGAAGTACCAACGAAAACAACCTACTCATAAGAAGGAGGATGCTTCAAGAATGATGGAAGTCGATAAGGCAACCATAGATGGCCTTGTATCAGCAGTCTCTAAATTGAGCACTTCTAACTCCACTCCTTCTTCTATCAGCTTTGGTCGCCAGCACGCTCGTGGCTTGACATTTGCTCCTCGAGCTGTTCAGCGTGAAAGTGGATCAAACTCTGCATTGCCCAGAACAAAGGGACAATAA 768 0.4492 MAMDMEEKQQSGFLYWKAIPRRFGPDSPFFASGNIERELLVKQVALELTAEEKQQLQNLVQEEGREVFCPIVGCGAHLQSLEDFENHYNARHAASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDVYECLVEGCGLKFKNYKSRQQHLVDKHKFPTSFEFFKKARPSKKQRQKYQRKQPTHKKEDASRMMEVDKATIDGLVSAVSKLSTSNSTPSSISFGRQHARGLTFAPRAVQRESGSNSALPRTKGQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2045 255 SMART c2h2final6 67 92 IPR013087 -
Glsi12g2045 255 SMART c2h2final6 94 117 IPR013087 -
Glsi12g2045 255 SMART c2h2final6 132 157 IPR013087 -
Glsi12g2045 255 ProSitePatterns Zinc finger C2H2 type domain signature. 96 117 IPR013087 -
Glsi12g2045 255 PANTHER UNCHARACTERIZED 7 242 IPR039258 -
Glsi12g2045 255 MobiDBLite consensus disorder prediction 168 194 - -
Glsi12g2045 255 MobiDBLite consensus disorder prediction 232 255 - -
Glsi12g2045 255 MobiDBLite consensus disorder prediction 239 255 - -
Glsi12g2045 255 ProSitePatterns Zinc finger C2H2 type domain signature. 134 157 IPR013087 -
Glsi12g2045 255 Coils Coil 46 66 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2045 2 248 C2H2 Transcription Factor Family AT5G14140 63.386 1.95e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g2045 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2045 12 35752931 35755636 Glsi12g2045 12 35752931 35755636 ECH