Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2031 ATGGCGGGAGAGGAGAAGTTCAAGCAAAGCACATCATCATGCCCGTCTTCTTTTGCTACCTCTTTTCCTTCTCTAACAACAAAAATGGAGAACCCGAACCAAAATTGTTGGCGAAAGCAAGTGGATGAAAATCTCAAGAGGCTCCACTCTCTTCTCTTCGGCGCCGATATTGCCCTTGAGAAGCAGGACTTCCAGTCGGCTTATGTCCTGGGGCTTCGTCTCATCGGCTTCCTGGACTCCCACTGTCACTCCGATGTCGACGAAGCCTATATACGGCCCATTCGCCGCGAAGCCTTGTCGAAAATCGACTCGGCTCGTCGATCTCTCATTCCAGACTCTGATCGCCAAGCTTTTGAACAAGCAAAGAAGTCTGCGGGCTGCATTTTTGGCAAAACAGGAGATATTGACATTGAGAAAATTAAGAAGTCAAAGTACTTTCAAGCTCTTCTCAAGCAATCTAAAGATAAGGGTGATCATCTGGGAAAGCAAGACAAAGCAGGCAACAAAACGTCAAAAGAATTGGTGCAAGCAAGGTTAACATCTGTTGATGGGAAAAGTATATTGAGGACTTACAATGATTCCAAGTTGAATTTGAAACATAACAGCTCTGAGGACTGCCTGATTGTTGAAAAGCCCCGGTCACATTCCAGCCACCCAAAGGGTTGTCTTGCCTCTTCTTTCTTGAAAGCTAAAGGTGAAGAAGGAACTCCTGGAAACACCTCGGGGACAAAACGTATACACATGGAAATTAATAGTCCCCGAGTCAGTAGTGTTAAGTCACCTTCAAACAAAGAGGAAGTTAGCCCGGATGTTGGTGGAAATGGGTTTGTTACTGCCAGAGCAAAATTGGAAATGGAATCAAGGCAGAGGGGAGAAGCAGTTGGTTCACCCAGTGCATCTGTCTCACAATGTGATAACAATTCTGTGAATCGGTTATACGGTGGGAGATCATACAGTTTTTCACGACGAGGCCTCCGTGGAAATTTTATTCCCCCCATTAAATCCAATGGAACTAGTGTTGGAAATATGACTTCACGAATTGCTGGAAAGTGTGATGATACTTTAGATGACTCAACAAAGAGATGTTTGGAAATGCTATGTGGTCCTGATGGTGAGCTTCCTGAAAAATTGAGGAATTTAGAACCTCGCCTTATTGAACATGTTAGTAACGAGATTATGGACAGAGATCCCAATGTCCGTTGGGATGACATTGCGGGATTGGAGCATGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAGGGATGCCGTTCTCCTGGCAGAGGTCTACTTCTATTTGGCCCACCAGGAACTGGTAAAACAATGATAGGAAAGGCCATAGCAGGAGAAGCGCAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACAAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGCCAGCCAGCAGTAATATTTGTTGATGAAATAGATTCGCTCCTATCTCAGCGCAAGTCAGAGGGTGAACATGAATCAAGTAGAAGGCTAAAGACACAGTTTCTAATAGAAATGGAAGGCTTTGACAGTGGCAGTGAGCAGATTCTTCTTATAGGGGCAACAAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGCGACTTACCAAAAGACTTTACATCCCCCTGCCATCCTCAGAGGCGAGAGCATGGATTGTACGTAGCCTCTTGGAGAAGGACGGATTATTCAAGCTCTCAAAGGAGGAAATTGATACCATATGCAACTTAACGGAAGGTTATTCGGGATCAGACATGAAGAATTTGGTGAAGGATGCTTCTATGGGTCCTCTAAGAGAGGCTTTAAGACAAGGCATAGAAATTACGAAGTTGAAGAAGGAGGATATGCGGCCAGTAAACCTTGAGGACTTTGAGAATGCCTTGCAAGAGGTGAGGCCTTCTGTTTCCTCAAATGAACTTGGCACTTACGATGAGTGGAACAAGCAATTTGGAAGCCTATCGCTGTAG 2040 0.4505 MAGEEKFKQSTSSCPSSFATSFPSLTTKMENPNQNCWRKQVDENLKRLHSLLFGADIALEKQDFQSAYVLGLRLIGFLDSHCHSDVDEAYIRPIRREALSKIDSARRSLIPDSDRQAFEQAKKSAGCIFGKTGDIDIEKIKKSKYFQALLKQSKDKGDHLGKQDKAGNKTSKELVQARLTSVDGKSILRTYNDSKLNLKHNSSEDCLIVEKPRSHSSHPKGCLASSFLKAKGEEGTPGNTSGTKRIHMEINSPRVSSVKSPSNKEEVSPDVGGNGFVTARAKLEMESRQRGEAVGSPSASVSQCDNNSVNRLYGGRSYSFSRRGLRGNFIPPIKSNGTSVGNMTSRIAGKCDDTLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAQATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRSLLEKDGLFKLSKEEIDTICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVNLEDFENALQEVRPSVSSNELGTYDEWNKQFGSLSL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2031 679 ProSitePatterns AAA-protein family signature. 540 559 IPR003960 GO:0005524|GO:0016887
Glsi12g2031 679 Pfam AAA+ lid domain 595 640 IPR041569 -
Glsi12g2031 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 674 IPR027417 -
Glsi12g2031 679 FunFam Fidgetin like 1 569 655 - -
Glsi12g2031 679 Pfam Vps4 C terminal oligomerisation domain 641 675 IPR015415 -
Glsi12g2031 679 PANTHER AAA DOMAIN-CONTAINING 180 676 - -
Glsi12g2031 679 Pfam ATPase family associated with various cellular activities (AAA) 438 568 IPR003959 GO:0005524|GO:0016887
Glsi12g2031 679 MobiDBLite consensus disorder prediction 253 275 - -
Glsi12g2031 679 Gene3D - 569 655 - -
Glsi12g2031 679 Gene3D - 397 671 IPR027417 -
Glsi12g2031 679 SMART AAA_5 434 570 IPR003593 GO:0016887
Glsi12g2031 679 FunFam Fidgetin-like 1 397 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2031 Glsi-ChrGlsi12 35694777 35700085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2031 353 677 Calmodulin-binding Proteins AT3G56690 31.045 1.73e-41 160