Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2026 ATGGGAGAGGATTCTAGGCTGCTCCAAGAAATAACCATGGAAGGGGAAGTAGAAAGAGACCCAGAAAGCAATTCACAGCTCGAGAGGAGTCGGACTCTGTCTTCCACTCCACATGCCCTGGTTGGAGAAAGAGTTTCTTATATAGAAAGCTTGGACTACGAGATAAACGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAATACATATTCTTGAAATGGTCGCTGGCATTCCTGGTTGGACTTCTTACTGGTATTATAGCAACTCTCATTAATCTTTCCATTGAGAATATTGCGGGCTACAAGCTTCACGCAGTTGTTGAATACATCCACAATGAAAGGTACATAGCGGGATTCCTATATTTTAGTGGCTTTAATTTTCTTTTGACTTTTTTGGCCGCGGTTCTGTGCGTGTGTTTTGCACCCACGGCAGCTGGACCTGGAATACCAGAAATCAAAGCTTATCTGAACGGCGTTGATACTCCCAATATGTATGGTGCTTCAACATTGATCGTCAAGATATTTGGAAGCATCGGAGCTGTCTCTGCAGGCCTAGACTTAGGAAAAGAAGGGCCCTTGGTACATATTGGCAGCTGCATTGCTTCCTTACTCGGCCAAGGGGGCCCTGATAATTACCAGATCAAATGGTGCTGGCTTCGATATTTCAACAATGATCGTGACCGCCGGGATCTTATTACGTGTGGCGCTTCTTCGGGGGTTTGTGCAGCTTTCAGGTCCCCTGTTGGTGGAGTTCTCTTTGCTCTAGAAGAGGTGGCAAGCTGGTGGAGAAGTTCTCTCCTCTGGAGAACTTTTTTCAGCACAGCTGTGGTGGTGGTAGTCCTCAGGGCCTTCATTGAAATCTGCAACTCTGGGAAATGTGGACATTTTGGAAAAGGAGGGCTGATCATATTTGACGTGAGTAATGTCACTGTGAGGTACCACGTGACGGATATCATCCCTGTTACAATCATTGGAATCATTGGCGGCGTAGTGGGAAGCCTTTATAACTATCTTCTCCACAAGGTCCTCAGACTCTACAACCTCATTAATCAGAAGGGAAGAATACATAAGCTCCTCCTCAGTCTTGCAGTTGCACTCTACACATCGGTTTGCCAATATGGTCTCCCATTCCTAGCTAAATGTACCCCCTGTAATTCATCACTTCCAGAATCTGTCTGTCCCAACAATGGACAGTCTGGAAATTTCAAACAACTCAATTGCCCAAGGGGCTACTACAATGATCTTGCTACTCTGCTCCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAAGTAACACTCCTCAGGAATATCATCCCTCCACCCTCCTAGTTTTCTTTGCACTTCATTTCATCTTAGGACTAATTACTTTTGGCATTGCTGTGCCCTCTGGACTCTTCCTCCCAATCATCCTCATGGGTTCAGCTTATGGCCGTCTTCTGGGTATCTTTATGGGACCACATACAAACATTGACCAAGGACTGTTTGCCGTTCTTGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACAGTATCCCTTTCTGTTATCTTCCTTGAACTCACCAACAACCTTCTCCTCCTACCGATGACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAATTTCAACCAAAGCATCTATGAGATTATACTGCATTTAAAAGTCCTTCCTTTCATGGATGCAAATCCTGGGCCATGGATGAGAAATCTCACAGTAGGTGAGCTTGTTGACGTCAAACCAGCAGTGGTTACCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTAGATGTCCTGAAAGACACAACACATAATGGTTTCCCTGTTGTGGATGATGGAGTAGTACTACCAACAGGACTGGCCAATGGGGCAACAGAAGTGCATGGCCTGATTCTAAGAGCACACCTCATCCAAGCGCTTAAAAAAAAGTGGTTCTTAAAAGAGAAACGGAGAACAGCAGAATGGGAAATTAGAGAAAAATTTACCTGGGTAGATCTGGCTGAGAGAGAAGGGAATATTGAAGAGGTGGCTGTCACAAGTGAGGAAATGGAGATGTTTGTTGATTTACATCCTCTCACCAATACAACTCCCTACACAGTGCTAGAGAGCATGTCAGTGGCAAAAGCAGTGATAATCTTCAGGCAAGTGGGACTTCGCCATCTGCTCGTTTTATACAAGTATCAAGCATCTGGGGTATCTTCTGTAATTGGGATCCTGACCAGACAGGATCTACTGACCCACAACATTTTGACAGTCTTTCCTCACCTGGCGAAATCTAATGGCAAAGAAAATAGGAACTGA 2334 0.4473 MGEDSRLLQEITMEGEVERDPESNSQLERSRTLSSTPHALVGERVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWSLAFLVGLLTGIIATLINLSIENIAGYKLHAVVEYIHNERYIAGFLYFSGFNFLLTFLAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYQIKWCWLRYFNNDRDRRDLITCGASSGVCAAFRSPVGGVLFALEEVASWWRSSLLWRTFFSTAVVVVVLRAFIEICNSGKCGHFGKGGLIIFDVSNVTVRYHVTDIIPVTIIGIIGGVVGSLYNYLLHKVLRLYNLINQKGRIHKLLLSLAVALYTSVCQYGLPFLAKCTPCNSSLPESVCPNNGQSGNFKQLNCPRGYYNDLATLLLTTNDDAVRNIFSSNTPQEYHPSTLLVFFALHFILGLITFGIAVPSGLFLPIILMGSAYGRLLGIFMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLSVIFLELTNNLLLLPMTMIVLLIAKTVGDNFNQSIYEIILHLKVLPFMDANPGPWMRNLTVGELVDVKPAVVTLHGVEKVANIVDVLKDTTHNGFPVVDDGVVLPTGLANGATEVHGLILRAHLIQALKKKWFLKEKRRTAEWEIREKFTWVDLAEREGNIEEVAVTSEEMEMFVDLHPLTNTTPYTVLESMSVAKAVIIFRQVGLRHLLVLYKYQASGVSSVIGILTRQDLLTHNILTVFPHLAKSNGKENRN 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2026 777 ProSiteProfiles CBS domain profile. 704 770 IPR000644 -
Glsi12g2026 777 PRINTS Chloride channel signature 502 518 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 520 539 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 558 572 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 149 166 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 180 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 Gene3D - 577 763 IPR046342 -
Glsi12g2026 777 CDD ClC_6_like 49 571 - -
Glsi12g2026 777 MobiDBLite consensus disorder prediction 1 32 - -
Glsi12g2026 777 Gene3D Clc chloride channel 71 573 - -
Glsi12g2026 777 Pfam Voltage gated chloride channel 137 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g2026 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 591 758 - -
Glsi12g2026 777 MobiDBLite consensus disorder prediction 1 26 - -
Glsi12g2026 777 Pfam CBS domain 706 757 IPR000644 -
Glsi12g2026 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 16 762 - -
Glsi12g2026 777 SMART cbs_1 707 760 IPR000644 -
Glsi12g2026 777 SMART cbs_1 593 652 IPR000644 -
Glsi12g2026 777 SUPERFAMILY Clc chloride channel 58 573 IPR014743 -
Glsi12g2026 777 SUPERFAMILY CBS-domain pair 577 757 IPR046342 -
Glsi12g2026 777 PRINTS Plant CLC chloride channel signature 297 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2026 777 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2026 777 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2026 777 PRINTS Plant CLC chloride channel signature 265 273 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2026 777 PRINTS Plant CLC chloride channel signature 279 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g2026 777 FunFam Chloride channel ClC3 72 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2026 Glsi-ChrGlsi12 35670476 35674346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2026 20 774 Ion Channels AT3G27170 76.680 0.0 1187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2026 12 35670476 35674346 Glsi12g2026 12 35670476 35674346 ECH