Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2025 ATGGGGCGCAAGAACACAATCTTCTTGGTATTGGTTGCTGTTTTGATCACAAAGGTAGCCTTGGCAGCTCAACATGTTGTTGGTGGAAGCCAAGGTTGGGATGAATCCACAGATTTTGACTCATGGGCTTCAGGACAAACATTTAAGGCTGGCGATCAACTTGTTTTCAAGTACACTCCTGGGTTGCATAGCGTGGTTGAACTAGGTAGCGAGAGTGAATACAAGAATTGTGATATTGGCAATGCAGTGAAGTCCATGAGCAGTGGGAACGATGTGGTAAAATTGAACAAAGCAGGTACAAGGTACTTTACCTGCGGCACCATAGGTCACTGCGGTCAAGGCATGAAGTTGAAGGTTACAACATTGGCTGGGAATGAACCCTCTACCCCTGCATCGTCTTCATCTTCCCCTACTTCTACTTCTACTTCTGCTTCTGCAGCTCCACGCTCACAAGGCCTTGCCTCCTTTTTGCTAATTTTTGCATTGTCGGTTGCCTCTCTGCTTTCCTTGCACGAGGGAAATATGACCCTCTTCCTTCTCTCAGCTCGGCCATCCCTTCCTCTCTTCACCTGCCACGCCACTACCGCTTCGCGAACCCACCCTTCCCCTCCGCCGTCGCCGCATCCTCCTCAAACTTTGCCGTTAAACCCTAGTTCAAGTGTACAGTTCCCGGCCCCGCTAACTTGTGCTCTTCAGTGTCCGCACTTCCAATCGTGCTCAGGGTGCACGCACGAGCTAAATCTCCACCATCCGATTATAGTGGACGAAGCCACCAATTTCTTTAAAAAATATGGAGTCTTAGATTTCACATTTGATAGTTGTAAACTGTGGGGTTGGAGATGCCGGGCAAAATTGGCTGTACGTGGTTCATCAACTAACCCTCTCATTGGACTTTATGAGGAGGGTACTCATAACATAGTTGACATTCCGCACTGCAAAGCTCATCATCCTAATATTAATGCTGCCGTGGACCTACTTAAACAAGGTATTACTGAGGCGGAAGTTCAGCCATATGATGAAGATGAGGGTACTGGTGATTTGCGATACGTCCAGATGGCCGTCACAACATACAACACATCTCTTCCTGCCGCAGAGAGATATAAGAATGGAAAGGTACAGGTTACTTTAGTTTGGAATTCAAGAAACGAAAATTCACCCAGGTCGGACAAATTGAATGCATTGGCAAATTTTCTATGGAGAAACGGGGGACCAAGGAGCAGTTTTCATTTAATTCACTCAGTGTGGGCCAACTTTCAGACTTCCACTAACAATATCATTTTTGGGAATAGATGGAGACATCTTCTTGGAGAAAGAGATTTTTGGGAACATGTTGGTGGAATTGATGTGTCCTTGGCTCCATCCAGTTTTGGCCAGGCAAACACACGTGCTTTTAATATCTTGCTTCGGAAGTTACAGAAGTATGTTCCTTATGGAGCATCTGTTACAGATTTGTATGCTGGAGCTGGGGCCATTGGTTTGTCATTAGCTGCCACAAAAAAGTGCAGATCTGTTAAGTGCATTGAGATTAACAAAGAGTCGAAGCTATCTTTTGAGAAGACAATTGAGCGCCTGCCTGCCACCATTGACAGTAGCATCACTTGGCACCATGCAGATGCTTCAAGAGAACCTCTTTCTTGGCTTGTGGGCTCAGATGTCATTATCATTGATCCTCCTAGAAAAGGACTAGATGCATCTCTTATTGATACATTGCAGAATATATCATCAGTAGAGCGTAGAGTCTTTTTATCATCTGAAAGCTCTAACTCAAGAGTCAAGGAAGAGAAAAGACCTTGGGTTTTACGTGCTAAAGAAGATACAGTCCAGATTGGAAGCAAAACACCTCTGGAGAATAGCTCTCAGTCACTGCCACAAACCCTTATATATATCAGTTGTGGATGGGAAAGATTCAAAGAGGACTGCAAGTCATTGTTGTCTAATAAGGCATGGCACTTGGAAAAAGCCCATGGTTTTAATTTTTTTCCTGGCACCCAAAGCATTGAAGTTTTGGCTGTATTCAAGAGGGGCCCTCAGAAAGAGAAATCAGGAAAAAAGAAGAAGAAGAGGCGCTTGTAG 2073 0.4486 MGRKNTIFLVLVAVLITKVALAAQHVVGGSQGWDESTDFDSWASGQTFKAGDQLVFKYTPGLHSVVELGSESEYKNCDIGNAVKSMSSGNDVVKLNKAGTRYFTCGTIGHCGQGMKLKVTTLAGNEPSTPASSSSSPTSTSTSASAAPRSQGLASFLLIFALSVASLLSLHEGNMTLFLLSARPSLPLFTCHATTASRTHPSPPPSPHPPQTLPLNPSSSVQFPAPLTCALQCPHFQSCSGCTHELNLHHPIIVDEATNFFKKYGVLDFTFDSCKLWGWRCRAKLAVRGSSTNPLIGLYEEGTHNIVDIPHCKAHHPNINAAVDLLKQGITEAEVQPYDEDEGTGDLRYVQMAVTTYNTSLPAAERYKNGKVQVTLVWNSRNENSPRSDKLNALANFLWRNGGPRSSFHLIHSVWANFQTSTNNIIFGNRWRHLLGERDFWEHVGGIDVSLAPSSFGQANTRAFNILLRKLQKYVPYGASVTDLYAGAGAIGLSLAATKKCRSVKCIEINKESKLSFEKTIERLPATIDSSITWHHADASREPLSWLVGSDVIIIDPPRKGLDASLIDTLQNISSVERRVFLSSESSNSRVKEEKRPWVLRAKEDTVQIGSKTPLENSSQSLPQTLIYISCGWERFKEDCKSLLSNKAWHLEKAHGFNFFPGTQSIEVLAVFKRGPQKEKSGKKKKKRRL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2025 690 SUPERFAMILY Cupredoxins 22 121 IPR008972 -
Glsi12g2025 690 Pfam Plastocyanin-like domain 35 115 IPR003245 GO:0009055
Glsi12g2025 690 FunFam Blue copper 21 127 - -
Glsi12g2025 690 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 232 672 IPR029063 -
Glsi12g2025 690 Gene3D Vaccinia Virus protein VP39 607 672 IPR029063 -
Glsi12g2025 690 CDD AdoMet_MTases 483 576 - -
Glsi12g2025 690 Gene3D - 280 457 - -
Glsi12g2025 690 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 237 675 IPR010280 GO:0006396|GO:0008173
Glsi12g2025 690 MobiDBLite consensus disorder prediction 200 214 - -
Glsi12g2025 690 MobiDBLite consensus disorder prediction 123 146 - -
Glsi12g2025 690 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
Glsi12g2025 690 Pfam Conserved hypothetical protein 95 463 596 - -
Glsi12g2025 690 CDD Phytocyanin 23 120 - -
Glsi12g2025 690 PANTHER BNAA06G32370D PROTEIN 206 679 - -
Glsi12g2025 690 Gene3D Vaccinia Virus protein VP39 272 584 IPR029063 -
Glsi12g2025 690 MobiDBLite consensus disorder prediction 195 214 - -
Glsi12g2025 690 Gene3D - 21 126 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2025 Glsi-ChrGlsi12 35664679 35670105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2025 7 122 Miscellaneous Gene Families AT3G27200 66.379 2.73e-51 174