Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2020 ATGGGCAAATCAGAAATGATCACTGAGCTGCTCCACCTGAGAGCTTTGGTCTTTCTGTTCTGGCTGCTTGTCCCCTCACTTGGAGAAGAGCTGCTGAGCTGCGACACAACATCCCCAGACGCCTCTGGCTACCGTTGCAGTGGAAATGAATCACAGAGCCAATGTGGAACATTTGCAGTTCTCCGCACTAATTCATACTACTCATCTCTCTTCAACTTGAGCTTTTACTTGGGAATCAATCGGTATGTAATTGCAGAAGCAAATGGGTTCTCTGCAGAAACAGAGTTCCTCTCCCAGGAACAACCTCTGCTGATACCAATAGATTGCAAATGCAAAGGTGGCTTCTTTGATGCTGAATTGACCAAAACTACAATTGAAGGGGAAAGCTTTTATGGTATTGCTCAATCGCTGGAGGGCTTGACAACCTGCAAGGCTATTCGGGATAAGAACCCAGGTGTATCACCGTGGGATCTTGATGATAAAATTAGATTGCTGATCCCATTGAGATGTGCCTGCCCCTTTTCATCTAGAGTTAGTCCAGAGCCAAGGCTTCTGCTTTCTTATCCAGTAAGTGAAGGTGATACAATTTTCAATTTGGCATCCAAGTTCAATACCACTGCAGAAGCAATTTTTTCCTCAAATAACATATCCTCGAAAGACTTCAGACCTGATAGGCTTACACCCTTTACTTCCCTTCTGATCCCATTCAATAGTGAGCCCATTCTTGGTTATCTGGGTAAACCCAGTGAACCCAATTCGGGTAATCCAGCAACCAGCATCCCAGTAATTAGTACACACAAGAAGCCAAAAACGTGGAAGGCTAAATTGTATATTGGGCTAGCTGGGGTTGCTGTTGGAGTTTGCATTGCTGTTGTAGTAGCCTGCATAATGATTAGATTGAAGAACGAGAAGAAAAAGAAGTCGGGGAAAGGAGGAGGCGATGTGGAGCTACAACATCTTAACATTAGTGTGAGAACCACCAGTGACAAGAAAGTTTCGTTCGAGGGATCCCAGGATACTCTTGGTGGAAAAACACTTGGCACCACTCCTCGTAAGATGCTGCTAGAGACGTACACTATTGAGGAGCTGAGAAAATCAACCGAGGGCTTCAATTCAAGCAGTCACATTGAGGGAACTGTTTTCCATGGTCGCTTAAAAGGGAAGAATATGGCAATCAAACGCGCGAGCACAGAAACAGTGTCAAAGATAGATTTTGGGCTCTTCCATGACGCACTCCACAACCACCCCAACATACTTAGGCTGTTTGGAACGTGTTTGACCGAAGGTCCTGAGTCATTTTTGGTCTTTGAGTACGCCAAAAATGGGTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATAAAGAACCAGTTCATATCTTCCTGCTATTGTTTCCTGACATGGAGCCAGAGGCTTAGGATCTGTCTTGATGTGGCCATGGCCTTGCAGTATATGCACCAGGTTATGAATCCAAGCTATGTCCATAGAAATGTGAAGAGCAGGAACATCTTTTTAGATGAAGAATTTGGTGCCAAGATAGGAAATTTTGGGATGGCAGGGTGTGTGGAAAATGTCACTGAGGATACACATTTCTATTCAACCAACCCTGCCTCTTGGGGTCTGGGTTATTTGGCCCCTGAATATGTGCATCAAGGTATAACTTCCCCAAGCATTGATATCTTTGCTTACGGAGTGGTTTTGCTGGAAGTTCTGTCTGGTCAAACACCAATAAGCAGGACCAAGGAGAAGGGGGAAAGAAGCATTTTGCTTACAGATAAAATAAAGTCCATTTTGAAGTCAGAAAATGTGGATGAACTAAGGGAGTGGATGGACAGGACATTGGGTGAGAATTATTCATTTGATGCAGCGGTGACAGTGGCCAACATCGCTAGAGCTTGTGTAGATGAAGATTCTTGTTTGAGGCCAAGTGCTGGGGAAGTTGTTGAGAAGCTATCAAGATTGGTGGGGGAACTGCCGGAAGGGGATCACTTGTTGATGTGTGAAAGCTCTTGCAAACCGCTGGTGAAGGCAGGGGCCAAAAAACCTGTGAATGTCTTTTGA 2061 0.4488 MGKSEMITELLHLRALVFLFWLLVPSLGEELLSCDTTSPDASGYRCSGNESQSQCGTFAVLRTNSYYSSLFNLSFYLGINRYVIAEANGFSAETEFLSQEQPLLIPIDCKCKGGFFDAELTKTTIEGESFYGIAQSLEGLTTCKAIRDKNPGVSPWDLDDKIRLLIPLRCACPFSSRVSPEPRLLLSYPVSEGDTIFNLASKFNTTAEAIFSSNNISSKDFRPDRLTPFTSLLIPFNSEPILGYLGKPSEPNSGNPATSIPVISTHKKPKTWKAKLYIGLAGVAVGVCIAVVVACIMIRLKNEKKKKSGKGGGDVELQHLNISVRTTSDKKVSFEGSQDTLGGKTLGTTPRKMLLETYTIEELRKSTEGFNSSSHIEGTVFHGRLKGKNMAIKRASTETVSKIDFGLFHDALHNHPNILRLFGTCLTEGPESFLVFEYAKNGSLKDWLHGGLAIKNQFISSCYCFLTWSQRLRICLDVAMALQYMHQVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENVTEDTHFYSTNPASWGLGYLAPEYVHQGITSPSIDIFAYGVVLLEVLSGQTPISRTKEKGERSILLTDKIKSILKSENVDELREWMDRTLGENYSFDAAVTVANIARACVDEDSCLRPSAGEVVEKLSRLVGELPEGDHLLMCESSCKPLVKAGAKKPVNVF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2020 686 ProSiteProfiles LysM domain profile. 186 234 IPR018392 -
Glsi12g2020 686 FunFam PTI1-like tyrosine-protein kinase 3 439 663 - -
Glsi12g2020 686 SUPERFAMILY LysM domain 187 235 IPR036779 -
Glsi12g2020 686 Gene3D Transferase(Phosphotransferase) domain 1 439 660 - -
Glsi12g2020 686 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 27 657 - -
Glsi12g2020 686 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Glsi12g2020 686 Gene3D LysM domain 186 240 IPR036779 -
Glsi12g2020 686 Pfam Protein kinase domain 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2020 686 SUPERFAMILY Protein kinase-like (PK-like) 358 651 IPR011009 -
Glsi12g2020 686 Pfam LysM domain 188 235 IPR018392 -
Glsi12g2020 686 CDD LysM 187 234 IPR018392 -
Glsi12g2020 686 SMART LysM_2 187 235 IPR018392 -
Glsi12g2020 686 ProSiteProfiles Protein kinase domain profile. 335 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2020 Glsi-ChrGlsi12 35641613 35643673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2020 43 679 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 41.018 1.58e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi12g2020 Pkinase 3.4e-29 CL0016