Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2017 ATGAGACAATATTACCTTTATCTTCTGGTTCTTTCGTGGGTTTTGTCTATCAGAAGTACCCATGAACTACAAGCTGCTCAGACCCAAGTCTTATTACAGATGAAGAAGTATCTTGAGTACCCTGCCTCGCTGCAAATTTGGGATGATTATAATGGCGACTTTTGTAACCTTTCTTCATCCACACATAGCAGCATTAAATGTCAGGATAATTCTTTATCTGAGCTTAAAATTATGGGAGATAAAATTGCGAAGGTTAACGAATTCAATGGATTTGCAATTCCCAATCAAACATTGTCCGCGAGCTTCTCTATTGATTCTTTTGTCACCACACTGACGAGGTTGACCAGCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGCATTTGGGGTCCCCTTCCAGATAAGATTCATCGATTATCTTTGCTCGAAGTTTTGGACTTGAGCTCAAATTTCTTATTCGGTTCCATCCCACCAAAAATATCCACAATGGTAAACCTTCGTACACTAACACTCGATGGCAATTATTTCAATGACAGTATGCCCGACTGGTTTGAATCACTGTCTAATCTAAATGTCTTGAGTTTGAAAAACAACAGCTTGAAGGGTTCATTCCCCTCTTCATTATGCAGTATTAAGACACTTACTGATATTTCCTTGTCTCACAATGAGCTGTCTGGTGGATTGCCTGATTTGAGTGCTCTCACTGGCCTACATGTACTAAATTTAAGAGAAAACCGTTTAGATTCTGAACTACCACTGATGCCCATAGAAGTAGTCACAGTTCTGCTAAGCAATAATTCATTTTCTGGGCAGATACCAAGGCAGTTTGGTAGATTGGCTCAGCTTCAACATCTAGATCTTTCATCAAATCATCTTAGTGAAATGCCCCCATCCGCCTTGTTCTCTTTGCCAAATATCAGTTATTTAAATTTAGGAAGCAATATGCTGAGCGGGTCACTTCCAGACCAACTAAGTTGTGGCAGCAAACTTGGGTTTGTGGATATTTCTAGTAACAAGTTAATTGGTGGACTTCCTTCTTGCTTGGCCAGTACGTCCGATAGAAGAATTGTCAAATATGGCGGGAATTGTTTATCTGCTGATTCTCAACCTCAACAGCGAGGATCTTACTGTGAAGAATCTAGTACGGGCAGGAAGAAATTCAGGGCATGGAAAATAGCTGTAGTAGGGGCCATCATTATTGGACTTGTTCTTGTCCTTGTGCTTTCAGTGTTTGGGGTTTTGTTTTGTAAAAAATATCAGTCGAGAAAGGCATCTGAGCAGCATGTGTTGCCCAAGACTCTGCAAGATAATTCCACTACAGGGGTTTCCTCGGAACTGCTCGCAAATGCCAGATTCATTTCTAAAGCAGTGAAGCTAGGGGCACAAACTACTCCACTCTGTCGACTGATTTCAATTGAAGAGTTGAAGGAAGCCACAAAAGATTTCGACTTGTCAACATATATTGGTGAAGGCTTCTTAGGCAAGTCTGCTTCTGCATTTCAGCTGTATAAAGGTAAACTGGAGAATGGATCCTACGTAGTGATACGATCTTTGGCTCTTTCAAAGAAATGCTCAAGTCAAAATCTTAAAGCTCGCTTGGATTTACTCGCAAAGCTTCACCATCCAAATCTGGTCAGCCTCTTGGGTCATTGTATTGATGGTGGTGGACAAGATGATACCACCACCCATAAACTTCATCTTGTATATGATTATGTGCCGAATGGGAATTATCGTGCCCATCTGTCAGAGTTCTCTCTTGAGAAGCCACTTAAGTGGTCTGATAGATTGACAATTTTAATTGGAGTTGCCAAGGCTGTGCATTTTTTACATACTGGGGTTATTCCCGGTTGTTTTAGTAATCAATTGAAGACAAACAATATTCTACTTGATGTGCATCACATCCCCAAACTAAGCGACTATGGGATGTCCATCCTTGGAGAAGAGATCGAAATGTTTGAGGATGATGTTTATAATTTTGGATTCATATTGCTTGAATCACTTGTTGGACCCATAGCAAGTGAAAAAGGAGAAGAGTTTTTTCTAAATGAGAAGGCATCCTTTGGTAGCCAAGATGGTAGAAGAAAAATTGTGGATCCAATAGTGTTGACCACTTGCTCTCAAGAGTCATTATCAATCGCAATAGCTATAACAACCAAATGCATATCTCCAGAGCCATCATCTCGCCCCTCTTTTGAGGATGTCTTATGGAACTTACTGTATGCAGCTCAAGTCCAGGGCACAGCAGATGCAGACCAGAAATCAGATTTTGGTCATGATCTGGAAGTTGACATCTCAACCCATGCCATTATCCTCTTTAGTGAATGCTTCAAATTGTATGCTTCTTTTGTTGGATTCTCTGAAACACTTGATCGATCTGATGTTTCTAACTTTGATTCTGAGGAGAAGTTAAGAATTTCTGCATTTACACTTGCTCTTAGCGATCTCAAACTTTACCTCACTCCTATTTCCCCGGAAAATATTACGACAGTTTTGTCCTTACATTGTCGTGAACTTTTAGTAAGGGCTTGTGATTCTACACAATCCCTACAACATTCAAGTTATAAGTTCATCCGGAGGGGACTCATCATCTTGGCAGCCATGGTTCTAGGCATGAGAGGAAAGAACAGGAGAAGTGCTGCTGTTCAAATCGATTACCTCATTCATATTCAGGAGATTAAACCTTGGCCTCCATCTCAATCCCTCAGATCCCTTCGTTCTGTATTGATACAATGGGAAAATGGTCAACGCAGTTCTGGTTCTACCAATCTTGTTTCCCCCTCACTTGGTTCTGTTATAGGTGAAGGAAAAATTGAATTTAATGAGTCATTTAGACTTCCTGTGACTCTGTTGAGGGATATGTCTGTCAGAGGCGGTGAAGCTGATGTATTCCAAAAGAATTGCTTGGAGTTCAACTTGTTTGAGCCTCGAAGAGATAAGGCTGTTAAAGGTCAGTTGTTGGGAACTGCTATTATAGATTTGGCGGATTATGGTATACTTAAGGAGACTTTGAGCATTAGTGCTCCAATGAACTGCAAGAGGAACTACAGAAACACAGATCAACCACTGTTGTTCGTTAGAATTCATCCTGTTGAAAATGGTCACCCTAGCTCCTCATTGAGGGACGGGTTGTCTAAAGAAATGTTGAAGGGAAATAGTGGTGACTCTGTTTCGGCATTGATGAATGAAGAATATGCTGAGGAAGCTGAGAGTGCCTCTTTTACTGATGATGATGTTTCCTCACATTCATCTGTGGCTGCACTTGCTTCTGCCCTTGAGTCCAATGGGTATATACCTCCTGAACTTGAAGAGGTATCATTTCTCTTCCATTCTTGTATTGATAGAACCATGCAATTTGCTTTTATTATAACTCTGTTGATGTGCATGGTTATTCGCATAGTACCATTTGATATGGTAATTGCAACTAAATCGCAGAATGGATCAACTCAAAACACTATTAGAAATGATAAGGAGCACCGTTTGGCTTCAAAAACAAGGCTTGAAAAATCAAATATGATACCACAAGACAGATATGAGAAGCTGGAGAGGAGTGCATCATGCACATCGTCAGTGGATGTATCGTCTGATCTTGGGAGTTCACTAAATGGTCATGCTTCTATTAACTCTCCTAATCATACTTCGGTGACAACTCAAAAGCACGTTGTTTCCCCAATTTCTCATTGTTCTCCCTCATCCATAGTACTCAACCATTTAGATGAAGACTCTAAGACCGAGACTAGAAGCAGTGATCATGAGCATTTGGATCAGGAGGTTCATGAAATGGTTGCTAATATTAGAACTATAGTTACAGATGTTCAGACAAAAAGCAATGAATGTACTTCTAACAATTTCAACACAGCACCTTCAGATAGTAATCGCATCATGGGCAAGAATCCTGCTCCTGTAAACTGTGATGGTTCTGAAATCAATGACAAATTTTATGGGCAATATGAGGAAGCCGAAAAAAAATATTGTGCGGACGAAGGATGTGATAAATTTTACAATAGTTTTGCCGAGGAAAAACCTGAAAATGAAAACTCTAATTTGTATAAGCTAAACCATGCAGAAGATGAACAATATTTAGCAGAAGGTGCCAAAGATCATGTCTTATTGAGTACAGCAAATATTGGCGAGGGACATATTCTGAAAAGTGAAAGATTAAAGCATGTGAAGTCTGTAAGGTCACCATCAGAATTAGCTCGGAGTACTGGATTGCTTGGCAGTAATCATCTTGCAGAAGGAAAGGACGTTGGTACTGTTGGAGATTCACAAAATAGAGTAGGGAACTTCAGAAGCAGTGAGAGAAAGGATACTAAGGTTTATCTGAAGGAAGCAAGGAGTTCCATTTTGGACAACAAAACTGAGCTTTTGGAAAACAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATATTCAGTAGTTGCTGAGCATGGAAGCTCCATGAGTAAGGTCTATGCCCCAGCTCGGCGCCTTTCTAGGCTGTATCTTCATGCGTGTAAAGAAAATCTCCGAGCAAGAAAGGCTGGGGCAGCTAAAAGTTCTGTTTCAGGTTTAGTACTTGTTGCAAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGTTGTCTAATTCCATTGTGTTGAGAACAATTATATGCCAAACTGTGGCACCATTAGTTTCTGCTGGACCTAGCACGAAAAGGAAAAGTGAGGGAGAGGGGAATGACAAGATAACATCCCCATTAAGATGGAAAGGATCCTCTCCCAGAAAAAATGAAAACACAGCAATGGAGTATGGAGGTTTTGGTAACTGGGACGACCCCCATGTATACACATCAGCACTGGAAAAGATAGAAGCTTGGATCTTCTCCCGCATTGTGGAATCTATCTGGTGGCTGATTCTAACTCCACATATGCAGTCTGTTGATGCAAAGGTCACTAAAGATGTGGGTTCTGCCTTAAGTAAAACCTATGGAAGGTTGTCTAGCTCATGTGATCAAGAACAGGGGAAGCTTTCACAAGATATTTGGAGGAATGCTTTTAGAGAAGCCTGTGAAAAGCTCTGTCCCATTCGAGCTGGAGGGCATGAGTGTGGCTGTTTGCCTGTGCTGTCTAGATTGATAATGGAGCAGTGTGTGGCGAGATTAGATGTGGCTATGTTCAATGCCATCCTTCGGGAATCTGCTGATGAAATCCCAACTGATCCTGTATCTGATCCCATTACTTATCCCAAGGTTCTCCCCATTCCCCCTGGAAAATCAAGCTTTGGAGCTGGTGCACAGCTAAAAACTGCGATTGGGAACTGGTCTAGATGGCTAACTGACCTATTTGGTATGGACGATGATGACCCACTTGAAGACATTGATGACCCTAATAACAATGATGGAAGACCAAGTACATCTTTCAAGTCCTTCCATCTTCTTAATGCACTAAGTGAGCTCCTTATGCTTCCTAAGGATATGCTGCTGAATAGATCCATAAGGAAAGAGGTATGCCCAATTTTTAGTGCACCACTAATCAAGAGGATTCTAGACAATTTTGTTCCCGATGAGTTTTGCCCCGATCCAATTCCCGCTGCTGTTTTTGAAGCTCTGGACTCTGAGGATGATCTCGAGGATGGTAAGGAGTCTGTCAAAACTTTCCCATGCGTTGCAGCTCCGATTGCCTATTTACCTCCTCCCGCGTCTTCCATCACAAGCATTATTGGGGAGGTTGGAAGCAGATCTCAGCTGAGAAGAAGCAGGTCTTCTGTTGTCAGGAAAGCATACACCAGTGATGATGAGCTCGATGAATTAAACTGCCCCTTATCTTTAATATCTGATGATGGTTTCATGTGCTCACGGAAGTCAAAAGAAATACACAATGCATCTGCTGTCAGATATAAACTCCTCACGGATGTATGGAAGAACAGTGAATAG 5919 0.4127 MRQYYLYLLVLSWVLSIRSTHELQAAQTQVLLQMKKYLEYPASLQIWDDYNGDFCNLSSSTHSSIKCQDNSLSELKIMGDKIAKVNEFNGFAIPNQTLSASFSIDSFVTTLTRLTSLRVLSLVSLGIWGPLPDKIHRLSLLEVLDLSSNFLFGSIPPKISTMVNLRTLTLDGNYFNDSMPDWFESLSNLNVLSLKNNSLKGSFPSSLCSIKTLTDISLSHNELSGGLPDLSALTGLHVLNLRENRLDSELPLMPIEVVTVLLSNNSFSGQIPRQFGRLAQLQHLDLSSNHLSEMPPSALFSLPNISYLNLGSNMLSGSLPDQLSCGSKLGFVDISSNKLIGGLPSCLASTSDRRIVKYGGNCLSADSQPQQRGSYCEESSTGRKKFRAWKIAVVGAIIIGLVLVLVLSVFGVLFCKKYQSRKASEQHVLPKTLQDNSTTGVSSELLANARFISKAVKLGAQTTPLCRLISIEELKEATKDFDLSTYIGEGFLGKSASAFQLYKGKLENGSYVVIRSLALSKKCSSQNLKARLDLLAKLHHPNLVSLLGHCIDGGGQDDTTTHKLHLVYDYVPNGNYRAHLSEFSLEKPLKWSDRLTILIGVAKAVHFLHTGVIPGCFSNQLKTNNILLDVHHIPKLSDYGMSILGEEIEMFEDDVYNFGFILLESLVGPIASEKGEEFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAIAITTKCISPEPSSRPSFEDVLWNLLYAAQVQGTADADQKSDFGHDLEVDISTHAIILFSECFKLYASFVGFSETLDRSDVSNFDSEEKLRISAFTLALSDLKLYLTPISPENITTVLSLHCRELLVRACDSTQSLQHSSYKFIRRGLIILAAMVLGMRGKNRRSAAVQIDYLIHIQEIKPWPPSQSLRSLRSVLIQWENGQRSSGSTNLVSPSLGSVIGEGKIEFNESFRLPVTLLRDMSVRGGEADVFQKNCLEFNLFEPRRDKAVKGQLLGTAIIDLADYGILKETLSISAPMNCKRNYRNTDQPLLFVRIHPVENGHPSSSLRDGLSKEMLKGNSGDSVSALMNEEYAEEAESASFTDDDVSSHSSVAALASALESNGYIPPELEEVSFLFHSCIDRTMQFAFIITLLMCMVIRIVPFDMVIATKSQNGSTQNTIRNDKEHRLASKTRLEKSNMIPQDRYEKLERSASCTSSVDVSSDLGSSLNGHASINSPNHTSVTTQKHVVSPISHCSPSSIVLNHLDEDSKTETRSSDHEHLDQEVHEMVANIRTIVTDVQTKSNECTSNNFNTAPSDSNRIMGKNPAPVNCDGSEINDKFYGQYEEAEKKYCADEGCDKFYNSFAEEKPENENSNLYKLNHAEDEQYLAEGAKDHVLLSTANIGEGHILKSERLKHVKSVRSPSELARSTGLLGSNHLAEGKDVGTVGDSQNRVGNFRSSERKDTKVYLKEARSSILDNKTELLENKIKMLEGELREAAAIEAALYSVVAEHGSSMSKVYAPARRLSRLYLHACKENLRARKAGAAKSSVSGLVLVAKACGNDVPRLTFWLSNSIVLRTIICQTVAPLVSAGPSTKRKSEGEGNDKITSPLRWKGSSPRKNENTAMEYGGFGNWDDPHVYTSALEKIEAWIFSRIVESIWWLILTPHMQSVDAKVTKDVGSALSKTYGRLSSSCDQEQGKLSQDIWRNAFREACEKLCPIRAGGHECGCLPVLSRLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPITYPKVLPIPPGKSSFGAGAQLKTAIGNWSRWLTDLFGMDDDDPLEDIDDPNNNDGRPSTSFKSFHLLNALSELLMLPKDMLLNRSIRKEVCPIFSAPLIKRILDNFVPDEFCPDPIPAAVFEALDSEDDLEDGKESVKTFPCVAAPIAYLPPPASSITSIIGEVGSRSQLRRSRSSVVRKAYTSDDELDELNCPLSLISDDGFMCSRKSKEIHNASAVRYKLLTDVWKNSE 1972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2017 1972 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 257 381 - -
Glsi12g2017 1972 Pfam Protein tyrosine and serine/threonine kinase 484 644 IPR001245 GO:0004672|GO:0006468
Glsi12g2017 1972 ProSiteProfiles Leucine-rich repeat profile. 280 301 IPR001611 GO:0005515
Glsi12g2017 1972 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Glsi12g2017 1972 Pfam Leucine rich repeat 259 315 IPR001611 GO:0005515
Glsi12g2017 1972 ProSiteProfiles Protein kinase domain profile. 481 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2017 1972 ProSiteProfiles C2 NT-type domain profile. 872 1030 IPR019448 -
Glsi12g2017 1972 Coils Coil 1452 1472 - -
Glsi12g2017 1972 Gene3D Phosphorylase Kinase; domain 1 443 570 - -
Glsi12g2017 1972 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 24 255 - -
Glsi12g2017 1972 Gene3D Ribonuclease Inhibitor 259 376 IPR032675 -
Glsi12g2017 1972 Gene3D Ribonuclease Inhibitor 24 258 IPR032675 -
Glsi12g2017 1972 SMART LRR_typ_2 278 301 IPR003591 -
Glsi12g2017 1972 SMART LRR_typ_2 162 185 IPR003591 -
Glsi12g2017 1972 SMART LRR_typ_2 302 326 IPR003591 -
Glsi12g2017 1972 SMART LRR_typ_2 138 161 IPR003591 -
Glsi12g2017 1972 SMART LRR_typ_2 186 210 IPR003591 -
Glsi12g2017 1972 SUPERFAMILY Protein kinase-like (PK-like) 463 737 IPR011009 -
Glsi12g2017 1972 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 571 756 - -
Glsi12g2017 1972 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1440 1969 IPR021827 GO:0005643
Glsi12g2017 1972 Gene3D Transferase(Phosphotransferase) domain 1 652 763 - -
Glsi12g2017 1972 Gene3D Transferase(Phosphotransferase) domain 1 571 651 - -
Glsi12g2017 1972 MobiDBLite consensus disorder prediction 1563 1591 - -
Glsi12g2017 1972 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 877 999 IPR019448 -
Glsi12g2017 1972 SUPERFAMILY L domain-like 111 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2017 Glsi-ChrGlsi12 35618405 35631282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2017 6 685 Miscellaneous Gene Families AT5G14210 58.890 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Glsi12g2017 PK_Tyr_Ser-Thr 2.7e-13 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2017 12 35618405 35631282 Glsi11g1751 11 10926102 10934231 CCT
Glsi12g2017 12 35618405 35631282 Glsi12g2017 12 35618405 35631282 ECH