Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2014 ATGTACCCCATTTGGAAACAAGGATCCTTTCTCTTTCACAATATCCTTTGTGTCGTTCCTCTCGTATTCATAGGTTCTCGCTGCTACTGCTTCTTCTTCTTCTTCTTCATTGATCTCAGAGCTGCCTCAATTCCTTTGACCACAAGAGCCCAATTAAGCTTCATCTTCGAACTTGTCGCCTCCCTTTCCAAGATATTGTGGACTGAGATGGCTGTAGGTGTTATTCAGCAGTTATTGAGGAGGAAGCTCCAGTCTCAATATACTACCTCTTCCCTTCTGTCACCCATCATCACAAAGAAAGATGATGCTCGCTCTACAGGCAGCAGGTCATTAAGAGCACTTGCATTGATTGGAGCTGGTTTCTCAGGGTTTTTGAGTTTTGCAACAACTGCATCAGCTGATGAGGCTGAGCATGGCCTGGAATGTCCAAGCTATCCTTGGCCTCACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACCCGCCCTGGTAAACTCAGCGATCGCTTTCCTCAGCCTTATTCAAATGAAGCAGCTGCTAGGTTTGCTAACGGAGGAGCTTATCCTCCGGATCTTAGTCTGATTACCAAAGCTCGTCACAATGGTCAGAACTATGTATTTGCCCTTCTAACTGGTTATCGTGATCCCCCTGCTGGTGTTTCGATTAGAGAGGGATTGCACTATAATCCTTATTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGTGCTGTTGAATATGAAGATGGTATCCCCGCTACAGAAGCTCAGATGGGAAAAGATGTTGTCACATTCTTAAGTTGGGCTGCTGAACCTGAGATGGAAGAAAGAAAACTGATGGGTTTCAAATGGATATTTGTACTATCGCTGGCATTGCTTCAAGCTGCATATTTCCGTCGCTTGAGGTGGTCAGTTTTGAAGTCTCGGAAGCTGGTTCTTGATGTTGTCAATTAG 1131 0.4474 MYPIWKQGSFLFHNILCVVPLVFIGSRCYCFFFFFFIDLRAASIPLTTRAQLSFIFELVASLSKILWTEMAVGVIQQLLRRKLQSQYTTSSLLSPIITKKDDARSTGSRSLRALALIGAGFSGFLSFATTASADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYFRRLRWSVLKSRKLVLDVVN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2014 376 FunFam Cytochrome c1, heme protein 136 331 - -
Glsi12g2014 376 PANTHER CYTOCHROME C1 101 374 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 Pfam Cytochrome C1 family 147 363 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 FunFam Cytochrome c1, heme protein, mitochondrial 332 376 - -
Glsi12g2014 376 PRINTS Cytochrome C1 signature 281 292 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 312 331 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 145 164 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 165 184 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 292 311 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 210 230 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 243 267 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 PRINTS Cytochrome C1 signature 331 346 IPR002326 GO:0009055|GO:0020037
Glsi12g2014 376 ProSiteProfiles Cytochrome c family profile. 159 266 IPR009056 GO:0009055|GO:0020037
Glsi12g2014 376 SUPERFAMILY Cytochrome c 140 330 IPR036909 GO:0009055|GO:0020037
Glsi12g2014 376 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 331 375 IPR021157 -
Glsi12g2014 376 Gene3D - 136 331 IPR036909 GO:0009055|GO:0020037
Glsi12g2014 376 Gene3D - 332 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2014 Glsi-ChrGlsi12 35600560 35607430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2014 73 376 Chloroplast and Mitochondria Gene Families AT3G27240 85.948 0.0 503