Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1990 ATGGTGAGTGAAGAACAAAAACGCAGCCCGCAAAACCAAAAGAACCCAACAAGACAAACAAACCCAGTGGAAAATGGTGAAAACATGGCCAGTATCTTCAGCCCAAGATTCAAATCAGCGGCTGCTATGGCTGGTTGGGACGAAGAGGCCCTGCTATTAGCCAGCGTCATCGTCGAAGACACGCCAGACAGAGATTTCAAGCTCAAGAAACGCTCTGATTTGAACTTCAAGACTCCAACCTCCAATACAAGAAGGAAACGCAGAGCTCAGAGGAGTCCACACTCAATCCCAGTAGCAGTTCTTGACCTTGAGGAAGAAGACACTCCCAGAAGAAAAGATAGTGGCAAGAAGAAGAAAGAAAATAAAACTAGTTCTAATGAAGACATTAAAGTAGGAGAGAATATATTGACCGAGCAGAGATCTGGTTCTGTTCTTCCCTGCTTTGATAAACTCAGGGAGGAACTTTCCTGCGCTATTTGTTTGGAGATATGCTTTGAACCAAGTACCACTCCTTGTGGACACAGCTTTTGTAGAAAATGCCTTCGATCTGCAGCGGATAAATGTGGCAAAAGATGCCCAAAGTGCAGACAATTGATAAGTAATGGACGATCTTGCACCGTGAACACAGTTCTTTGGAATACAATACAGCTACTTTTTCCCCAGGAAGTGGAAGCAAGGAAAGCAGCCGGTGCCTTGAATAATCGAGAAGCTCAGCGCTCGAGTCCAGAAACAGCATTCTATAGTAATCTAAGGAATCGAAGCACACAAACATTAAGGGCATCAAGCAGAGGTACGAGTTCGAGGAGAAGAGAGATAGCAACCCAAGATGAGAATGCTGCATTGGCTAGAAGGCTGCAGAGAGAAACTGAAGAGCAAAGACTGGAAAATCAGGTGCTTCAGAATAATTCAAGGAACCAAATCCCATCATCATCTGCAAGAGCGAGGACAAGACGAGGGATTACTAGCCAAGATGAGGATTCTGCTTTGGCTCTCAGGTTGCAAAGAGAAGAGTTTATGCAGGCTTTTAGTGGAAGCCAGGGACAGTCCAGCAGAAATGTGTCTTTAGCAAGAGCAAATTTGAGGGCCATGGCCTCCAGAGCCATCAATCTTCGAATTAGAGATCGAAGAATATAA 1134 0.448 MVSEEQKRSPQNQKNPTRQTNPVENGENMASIFSPRFKSAAAMAGWDEEALLLASVIVEDTPDRDFKLKKRSDLNFKTPTSNTRRKRRAQRSPHSIPVAVLDLEEEDTPRRKDSGKKKKENKTSSNEDIKVGENILTEQRSGSVLPCFDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKRCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAAGALNNREAQRSSPETAFYSNLRNRSTQTLRASSRGTSSRRREIATQDENAALARRLQRETEEQRLENQVLQNNSRNQIPSSSARARTRRGITSQDEDSALALRLQREEFMQAFSGSQGQSSRNVSLARANLRAMASRAINLRIRDRRI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1990 377 Coils Coil 282 302 - -
Glsi12g1990 377 PANTHER UNCHARACTERIZED 102 369 - -
Glsi12g1990 377 SUPERFAMILY RING/U-box 149 220 - -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 295 317 - -
Glsi12g1990 377 Coils Coil 377 377 - -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 294 323 - -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 75 131 - -
Glsi12g1990 377 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 IPR018957 GO:0046872
Glsi12g1990 377 ProSiteProfiles Zinc finger RING-type profile. 157 196 IPR001841 -
Glsi12g1990 377 SMART ring_2 157 195 IPR001841 -
Glsi12g1990 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 226 IPR013083 -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 100 127 - -
Glsi12g1990 377 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 1 28 - -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 253 273 - -
Glsi12g1990 377 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1990 Glsi-ChrGlsi12 35431022 35432624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1990 149 262 C2H2 Transcription Factor Family AT5G39550 29.915 1.11e-06 48.5