Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g1988 | ATGGGAAGGCAGCCTTGTTGTGATAAGGTTGGCTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAACTTCATCCTCAACAATGGCATCCATTGTTGGCGAATGGTTCCCAAGCTTGCAGGTCTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCGGACCTCAAGAGAGGTGGATTCACAGAAATGGAAGAGGATCAAATTATTCGGCTACATTCTCGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAGGTTGAAGCTCCTGGGTGTGGACCCTTTGACCCACAAGCCAATTGAGCGAAAGGAACACATTGATGACAAAGATAAGAGAAATCTAGAGCCAAGTTCTGAAGAAAATGTGGAGATGAAGTCCTCGGACAGTAATACTAATGTCACAGTAGAAATCTCAAAAACAAAAGGGAAAGTGGAAGAAAACAAGGTGACTTGGGATGATACCTCTGATCTGTTAAACAACAACGAAATGATATGCTCAGACTGGGACTTTGGATCATGGATGAGCCGAGAAACTAACACCAGTACTAGTTCTTACAGTAGTTCTTTCTCTCTGGATGATTCTAGCCACCTTTCTATGGATGAATCCCCTTACCTACAGGAAAACTCCTTACTGCAATGGGTTCATAGTATGGATTCCATTCTCGCATGGGATAGCTTCAATCCTCTGGAAAAAGATCGTTTCTTCTTGGAAAATTATAGACAATCAGCATAA | 819 | 0.4225 | MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIRLHSRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKLLGVDPLTHKPIERKEHIDDKDKRNLEPSSEENVEMKSSDSNTNVTVEISKTKGKVEENKVTWDDTSDLLNNNEMICSDWDFGSWMSRETNTSTSSYSSSFSLDDSSHLSMDESPYLQENSLLQWVHSMDSILAWDSFNPLEKDRFFLENYRQSA | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g1988 | 272 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Glsi12g1988 | 272 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Glsi12g1988 | 272 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 1 | 218 | - | - | |
| Glsi12g1988 | 272 | MobiDBLite | consensus disorder prediction | 152 | 167 | - | - | |
| Glsi12g1988 | 272 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Glsi12g1988 | 272 | Pfam | Myb-like DNA-binding domain | 67 | 110 | IPR001005 | - | |
| Glsi12g1988 | 272 | CDD | SANT | 16 | 61 | IPR001005 | - | |
| Glsi12g1988 | 272 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Glsi12g1988 | 272 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Glsi12g1988 | 272 | Gene3D | - | 68 | 157 | - | - | |
| Glsi12g1988 | 272 | FunFam | MYB transcription factor | 11 | 67 | - | - | |
| Glsi12g1988 | 272 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Glsi12g1988 | 272 | Gene3D | - | 11 | 67 | - | - | |
| Glsi12g1988 | 272 | MobiDBLite | consensus disorder prediction | 129 | 151 | - | - | |
| Glsi12g1988 | 272 | CDD | SANT | 70 | 110 | IPR001005 | - | |
| Glsi12g1988 | 272 | MobiDBLite | consensus disorder prediction | 129 | 168 | - | - | |
| Glsi12g1988 | 272 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Glsi12g1988 | 272 | FunFam | MYB transcription factor | 68 | 129 | - | - | |
| Glsi12g1988 | 272 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g1988 | Glsi-ChrGlsi12 | 35416384 | 35417454 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi12g1988 | 1 | 150 | MYB Transcription Factor Family | AT5G16600 | 69.737 | 4.17e-76 | 233 |
Transcription factors information