LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1987	ATGGGAAGGCAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAACTTCATCCTCGATAATGGCATCCATTGTTGGCGAATGGTTCCCAAGCTTGCAGGTCTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCGGACCTCAAGAGAGGTATTTTCACGGAAATAGAAGAGGATCAAATTATTCAGCTACATTCTCGTCTTGGTAACAGTTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACGCAAGAATCAAGAAGAAGTTGAAGCTCATGGGTGTGGACCCTTTGACCCACAAGCCAATTGAGCGAAAGGAACACATTGATGACAAAGATAAGAGAAATCTAAAGCCAAATTCTTCCAAAGGGTCTGAAGACAATGTGGAGATGAAGTCCTCGGACAGTAATACTAATACCACAGTAGAAATCTCAAAAACACAAGGGAATATGGAAGAAAACAAGGTGACTTGGGATGATACCTCTGATCTATTAAACAACAACGAAATGATATGCTCAGACTGGGACTTGGGATCATGGATGAGCCGAGAAACTAACACCAGTACTAGTTCTTACAGTAGTTCTTTCTCTCTGGAAGATTCTAGCCACCTTTCTATGGGTGAATCCCCTTACGTACAGGAAAACTCCTTTCTGCAATGGGTTCATATTTTGGATTCCATTCTCGCAAGGGATAGCTTCATTAATCCTCTCGAATAA	795	0.4201	MGRQPCCDKVGLKRGPWTIEEDHKLMNFILDNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGIFTEIEEDQIIQLHSRLGNSWSKIAAHFPGRTDNEIKNHWNARIKKKLKLMGVDPLTHKPIERKEHIDDKDKRNLKPNSSKGSEDNVEMKSSDSNTNTTVEISKTQGNMEENKVTWDDTSDLLNNNEMICSDWDLGSWMSRETNTSTSSYSSSFSLEDSSHLSMGESPYVQENSFLQWVHILDSILARDSFINPLE	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1987	264	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	208	-	-
	Glsi12g1987	264	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Glsi12g1987	264	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Glsi12g1987	264	CDD	SANT	16	61	IPR001005	-
	Glsi12g1987	264	CDD	SANT	70	109	IPR001005	-
	Glsi12g1987	264	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Glsi12g1987	264	Gene3D	-	69	173	-	-
	Glsi12g1987	264	MobiDBLite	consensus disorder prediction	127	147	-	-
	Glsi12g1987	264	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Glsi12g1987	264	SMART	sant	66	114	IPR001005	-
	Glsi12g1987	264	SMART	sant	13	63	IPR001005	-
	Glsi12g1987	264	FunFam	MYB transcription factor	68	129	-	-
	Glsi12g1987	264	Pfam	Myb-like DNA-binding domain	67	109	IPR001005	-
	Glsi12g1987	264	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Glsi12g1987	264	Gene3D	-	11	67	-	-
	Glsi12g1987	264	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Glsi12g1987	264	MobiDBLite	consensus disorder prediction	127	177	-	-
	Glsi12g1987	264	FunFam	MYB transcription factor	11	67	-	-
	Glsi12g1987	264	MobiDBLite	consensus disorder prediction	148	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1987	Glsi-ChrGlsi12	35412559	35413616	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1987	1	197	MYB Transcription Factor Family	AT5G16600	56.784	9.23e-77	234

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi12g1987		Myb_DNA-binding	1.4e-10	CL0123