Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1984 ATGGCTTCTTGGAATTCAATTCCGCTACAAGTAACGTACCAAGTATCGGGCTGGTTCGCTTTCATTTCCTGGTCTATCAGTTGTTACCCACAAGTCATCTTAAACTTTCGTAGGAAAAGTGTGGTGGGCTTAAACTTTGATTATGAAATACTCAACCTAACGAAGCACTCCTCGTACTTGATCTACAATGCCTCCCTCTACTTCAGCTCTGCTATTCAGAAACAGTACTTGGAGAAATATGGTTTTGGACAGATGATTCCGGTAGCTGCCAATGATGTTGCTTTCTCTACTCATGCGGTTATAATGAATTCCATTGTGCTGTGCCAAATTGGAATCTATGAACGTGGGAATCAGAAATTCTCCAAATATGCAGTTGGAATAGTGTGCGTGGTGTGGCTCTGTGCTGCACTCTGTTTTTTCATGGCAATACCTACCCAGTCTTGGCTTTGGCTAATCTCCATCTTTAACTCAATTCAAGTAGGGATGACCCTCATCAAATATATTCCCCAGGCATTCATGAACTTCTTGCGAAAGAGCACAGATGGATTCAGTATTGGCGGTGTTCTACTTGATTTTTCTGGAGGAATCTTCAATTATTCGCAGATGGCTGTGCAATCTATTGATCAAGGTTCATGGGTGAACTTGTATGGAAACCTTGGGAAAGTACTGATATCTTTGGTAACTGTATTATATGATTCTCTTCTAATTTGTCAACACTACGTACTATATCCTGCCAAGAAAGCTCGCTCTTCTTCCCAAGTTAATGGAAAATTCGGAGAGCCGCTACTCTGCCCAGCTCCAACACATGAGCAAACCAAAGGTTCACTTAATTCTTCTCATCAACCTCCACCACTGGAGGTATCCGATCCGTTCGATTTCCGCCGTAGTACCGCATCTTCTCTAGTGCTGTCGCAGCGGATTTTCCCCCTTTCCCTCCTCTGTTTTCCTTCTCAGGTTCCAATTTCTCTCTGCGTCTCAGTTCTTATCATGATTAACAGAGATTTTGTTGAAGGAGAGGTATAGTCCATGGAGGGTGTAGAACCTGATATGAAAAGTCATTCACAGGATGATGATGTGCAAAATGAAGGTCCAACATCGCCTGTAGCAGTTATTGATGTTGTGCAAGAGAGTCAAAGCCTTAAGGCTTCCTCTGTTGCAGATAGTAACATGGTCATTGATACTGAGCATGAGTGTACAAGCCCTAACATTTGTCCTGTTGACCATATCCAGATGGAAATTACTGGTGATTGTCAGAACTCAAACATTTCCTCCGATATCAAATTTCAGATTGATGCTGCAAGTGAACAGCTGTCTCAGAGATCCAACATTTCCTCTATTGATGTATCAATTGACAAGAGTGCTATAAAAAATGAGGAGGAAATGTATGTGGTACCGAAAATTGGCATGGAGTTTGATTTGGAAGACCATGCTTACGAGTGTTATAGCAGGTATGCTGTTTTGCAAGGTTTCAGTATAAGAAAAGATTTTGTCAACAAAAGTAGGGTGAATGGTGCAGTGGTATCTAGAAGATACACTTGCTATAGACAGGGTTATCGGCCTAACAAAAATAATGCAAACTTGAGGAAATCTCAGCAGGAAACAAGGACTGGTTGCCTGGCACATATGACTATTGCTCGTCAGCCTAATGGCAAGTTTCGTGTCACTCATTTTGAACCACAGCACAATCATGAGTTTGTGACACCCTGTACAGCTCATATGTTGCCATCACAGAAAAGATTGAGTTTTGCTCAAGCAGTTGAATCTAACGTAGCTAATGATTCTGGGTTGGATGGGGTACCAAAACTCGGAATGGGATTTGACTCGGAAGATCATGCATATGAATTTTATAATACATATGCTGGGCTCATAGGTTTCAGTGTTCGGAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTAGCATCTAGAAGGTTTACATGCTTTAGAGAAGGTTTTCGGCAGAAAGACAAACGGGATATGAATGTAAAGCGGCATCGAAAAGAAACTAGAATTGGATGTTTAGCACAGCTAGTAATTTCTCGTCAACATGATGGTAGGTATCGTGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCATGCAGAGTTCACATGTTACGATCACAGAAGAGAATAGCTACAACTCAAGCTGTTGAGAGCAACATGGTAGATGGTTCCAAGGTGCTTTCTAAGTCAGCCTCAGAATCAAATTGTAAGACTATTGAAGGTTTTGATGATCTGGGTTATGATCCCATAGATTATGAAAATAAATTGCCATTTAAGCGTATGAGAGAAATGAAAGAAGGAGAAATTGAAAAGATGAAGCAACACTTTCAAAGCAAACGATCAAAAAATCCTTCTTTCTTTTATGCTTTCCAACTTGATTCTGATGATCAGATAACTAATATATTTTGGGCTGATGCAAAGATGGCGGTAGACTACAGTGATTTTGGTGATGTTGTTTGCTTTGATTGTACTTACAGATTTTACACAGACTCCCGCCCTTTTGCTCCATTTCTTGGTATAAATAATCACAAGCAACTGGTTATCTTTGGCGCTGCACTTCTATATGATGAAACCATTGAATCCTTCAAGTGGCTGTTCCGTGTTTTCATAGAGGCAATGTCCGGAAGAAAGCCAAAAACAATTCTTATAGATCAAGATGTTATGATAGCTGAAGCAATCTCTTCTCTATTGCATGAGACAAGCCACCGAATTTGTGTATGGCATGTTTACCTAAATGCACTTAAGCAACTCAATCACATGTTTTTGGGATCAGGTTCTTTTGTTAATGATTTGAGTAGCTGCTTTTTTGATCATGAGGATGAGGAAGATTTTGTTAATGCATGGAATGCTTTGCTGGACAGGTATAATCTTTGGGAAAATGAATGGTTGCGTCGAATATATGAAAGCAAACACAAATGGGCCATAGCATATGGAAGGCAAATTTTCTGTGCTGACATAACAAGGGTGCTGCTGAGAGAAAATCTTACTGGCAGCTTGAAAAAGTACCTACAGAATGATTCAGATGTGCTGTCATTTTTCAAGCATCTTGGAAAGGTGGTGACTGATTGGAACTATAAGGAATTAGAAGCCAATTATGATATGAGCCAGCGTATGCCAGCCCTGATGGGGGATGTGATTCTTTTAAAGCATGCAAGGGATCCATACACGCCAAAGATATTTGATTTATTTCAGAAAGAATACGAAACTTGTTTGAATCTTGTGGCAAAAGATTGCAGTGAGAGTGGATCATTGTACAAATATAAAGTTAGCATATACGAACAAGTACGAGAGTATACAGTTACCTTTAATTCATCTAATGAGACGGTCACTTGCAGCTGTATGAAATTTGAGTATATGGGAGTCTTATGCAGCCATGCATTGAAAGTTCTTGATTACAGGAACATAAAGATACTTCCATCCTTGTACATCTTAAAGAGATGGACGAAAGATGCGCGAGTTTGA 3480 0.3991 MASWNSIPLQVTYQVSGWFAFISWSISCYPQVILNFRRKSVVGLNFDYEILNLTKHSSYLIYNASLYFSSAIQKQYLEKYGFGQMIPVAANDVAFSTHAVIMNSIVLCQIGIYERGNQKFSKYAVGIVCVVWLCAALCFFMAIPTQSWLWLISIFNSIQVGMTLIKYIPQAFMNFLRKSTDGFSIGGVLLDFSGGIFNYSQMAVQSIDQGSWVNLYGNLGKVLISLVTVLYDSLLICQHYVLYPAKKARSSSQVNGKFGEPLLCPAPTHEQTKGSLNSSHQPPPLEVSDPFDFRRSTASSLVLSQRIFPLSLLCFPSQVPISLCVSVLIMINRDFVEGEVXSMEGVEPDMKSHSQDDDVQNEGPTSPVAVIDVVQESQSLKASSVADSNMVIDTEHECTSPNICPVDHIQMEITGDCQNSNISSDIKFQIDAASEQLSQRSNISSIDVSIDKSAIKNEEEMYVVPKIGMEFDLEDHAYECYSRYAVLQGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYRPNKNNANLRKSQQETRTGCLAHMTIARQPNGKFRVTHFEPQHNHEFVTPCTAHMLPSQKRLSFAQAVESNVANDSGLDGVPKLGMGFDSEDHAYEFYNTYAGLIGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRDMNVKRHRKETRIGCLAQLVISRQHDGRYRVTHFEEKHNHELVAACRVHMLRSQKRIATTQAVESNMVDGSKVLSKSASESNCKTIEGFDDLGYDPIDYENKLPFKRMREMKEGEIEKMKQHFQSKRSKNPSFFYAFQLDSDDQITNIFWADAKMAVDYSDFGDVVCFDCTYRFYTDSRPFAPFLGINNHKQLVIFGAALLYDETIESFKWLFRVFIEAMSGRKPKTILIDQDVMIAEAISSLLHETSHRICVWHVYLNALKQLNHMFLGSGSFVNDLSSCFFDHEDEEDFVNAWNALLDRYNLWENEWLRRIYESKHKWAIAYGRQIFCADITRVLLRENLTGSLKKYLQNDSDVLSFFKHLGKVVTDWNYKELEANYDMSQRMPALMGDVILLKHARDPYTPKIFDLFQKEYETCLNLVAKDCSESGSLYKYKVSIYEQVREYTVTFNSSNETVTCSCMKFEYMGVLCSHALKVLDYRNIKILPSLYILKRWTKDARV 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1984 1159 SMART 26again6 1115 1142 IPR006564 GO:0008270
Glsi12g1984 1159 Pfam FAR1 DNA-binding domain 614 702 IPR004330 -
Glsi12g1984 1159 Pfam FAR1 DNA-binding domain 480 566 IPR004330 -
Glsi12g1984 1159 Pfam MULE transposase domain 824 916 IPR018289 -
Glsi12g1984 1159 MobiDBLite consensus disorder prediction 270 284 - -
Glsi12g1984 1159 ProSiteProfiles Zinc finger SWIM-type profile. 1104 1140 IPR007527 GO:0008270
Glsi12g1984 1159 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 452 584 IPR031052 GO:0006355
Glsi12g1984 1159 Pfam PQ loop repeat 152 206 IPR006603 -
Glsi12g1984 1159 Pfam PQ loop repeat 14 69 IPR006603 -
Glsi12g1984 1159 MobiDBLite consensus disorder prediction 262 289 - -
Glsi12g1984 1159 NCBIfam lysosomal Cystine Transporter 12 243 IPR005282 -
Glsi12g1984 1159 Gene3D - 12 124 - -
Glsi12g1984 1159 SMART ctns 165 196 IPR006603 -
Glsi12g1984 1159 SMART ctns 26 57 IPR006603 -
Glsi12g1984 1159 FunFam Cystinosin homolog 12 126 - -
Glsi12g1984 1159 Pfam SWIM zinc finger 1093 1139 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1984 Glsi-ChrGlsi12 35400169 35406448 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Glsi12g1984 MULE 8.1e-21 CL0219