Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1975 ATGAAGCGTTTTTCTTCCCTAAGAACAGGAACAGCTTTAGTTACTAGGCAGGCTCCGTTCGATTATTTTCTCCTAATCTTAATATGTGACTATGGTTTGAAATTTTTGGAGGGACTACAGAGACATGCTGCTACCGAGCAAGCCCTTGTTGAAGCCCTTCAAAATGTGAACTCTGAAGAGACCAACCCTGTTAAAGACTCTGGTGAGGATCTTGACAAGGGGTCTCATGGCATAAGACATCAGTACCTTTTACGACTCTATACCGATGACTGCCCCTTTTTTTCTGAGAACATTTGGGTCATTGAGGTGAAGGAGAATATAAACGGAAGGGAACCGTCGGAGCAGATAGAATGGAAGATAACTCCTCCGGGATGGATGCATAATATGTAGGCTCATTTGGATGCTTCTGTGCATGCTTCTTATGTTTCAGAAGAAAGGAATCATCCTTCTCTATCAGCCACAGCAGCGAGTAACTTTGTCAACGCAGATATCTTTGCCGGTAATCAAAAGCGGACGCGAAATGAAGAATTTCCTGAAAGGCTTGGTCAACCAGAGTATCAACATCCTAAGAGTAGAGCTTCGTCCCTGAGTGACTTGACAACAGCTGATCTCGCTTTACAATATCAAAAGCAAATACAGTTTGAAGATTTCCCTGAAAGACCAGGTCAGGTGGAATGTGCATATTTCGTGAAAACTGGAGACTGTAAATATGGTTCTACTTGTAGGTATCACCATGCTGCGAACAAAGCTCAGGGTCTAGGCCGTGTTTCAAGTGCGCGGGGCTTGCCCACGAGACCTGTGAGTTTCTAG 810 0.442 MKRFSSLRTGTALVTRQAPFDYFLLILICDYGLKFLEGLQRHAATEQALVEALQNVNSEETNPVKDSGEDLDKGSHGIRHQYLLRLYTDDCPFFSENIWVIEVKENINGREPSEQIEWKITPPGWMHNMXAHLDASVHASYVSEERNHPSLSATAASNFVNADIFAGNQKRTRNEEFPERLGQPEYQHPKSRASSLSDLTTADLALQYQKQIQFEDFPERPGQVECAYFVKTGDCKYGSTCRYHHAANKAQGLGRVSSARGLPTRPVSF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1975 269 SUPERFAMILY CCCH zinc finger 224 249 IPR036855 GO:0046872
Glsi12g1975 269 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 222 245 IPR000571 GO:0046872
Glsi12g1975 269 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Glsi12g1975 269 PANTHER PROTEIN PHOSPHATASE RELATED 178 266 - -
Glsi12g1975 269 MobiDBLite consensus disorder prediction 170 186 - -
Glsi12g1975 269 Gene3D - 179 253 - -
Glsi12g1975 269 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Glsi12g1975 269 MobiDBLite consensus disorder prediction 170 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1975 215 266 C2H2 Transcription Factor Family AT5G18550 50.000 2.20e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi12g1975 zf-CCCH 1.1e-07 CL0537