Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1973 ATGTGCCACAACAACCCTCCTCCTCCCCCTACTCCTTCAGATCTTACTCACTCCAACCCTATTCTCAAAACTCAAAAGCAACCTGCGGATTCTCTGAGTCTTACAGCACCTCGCCGAAAAAACAGAACCAAAATCAGGAAGCCCAAGTTCGTCAGTCTCCGCCTTCAACTCTTCCCCACCCATCATAAACCCTCATCTCCGTCTCTCGGCCAATCCAACCCAATGAACCATCAACAACAGCTCAACCTCTTCCCCTTACATCCAGAAAACATCGTGGATGACAAAGACGACATGCAGGACGAGCACAACGTCGCTTTCCTCTTCGTCTCCGACGGCGACGCCACCCTCAACGGCCTCCTCGAAGAAGACTCCGCCACCACAACCACGACGTCGGAGGAGCCGTGTTTGGGGAGCCCGTTCGATGAGGAGAACGGGAGCTCGCTGGTAAGGAAGGCGATGAAGAGGAGGAACAAGGAGGAGAGGGATGGGAGGGAGGAGAGGTGGGTGTGTTACTCGGAGGTGGTGAGGAAGAAGGAGATGATGGAGGAGGTGACTAGTGACTGTAGCGCTAGTGAGACGACGACGTTTGGGTTATTGTCGTTGAAGCTGGATTATGAGGGGATATTAAATGCTTGGTCCGATAAAGGCTCCCTTTACGTCGCAGGGGAGACCCCGCAGACTGTCCCCGACTTGCGTGATGATGTCCTTCCCCGTAATGCTGCCAATGTTGTGTGGAAGGCATGGGAAGTTGAAGAAGAAGGAGGAAGTAACAGTAAGAGTAAGATGAAGGGGAAGGAGGAAATTGGATGTAAGGTGGGGCAAAGGGAGGCAAGCGTGTTAAGATACAAGGAGAAGAGGCAAAGCAGGCTGTTCTCAAAGCGCATCCGCTACGAGGTTCGTAAGCTCAACGCTGAGAAGCGCCCCCGGATGAAGGACCGAGATCGTGAAAGTGCTCGTTATGCCGATTGTGCTCTAACCACAGCACGCAAGCCACTATTGGCTGTGCACTCTATCTTCTGTCAACAAGTTCCGCTACGTGCCTTTAAGCTTCCTGCAGCCTCTCTGCGTATAAGACAAACCTTTTCATTAGGATCAGCAACGTCTTCTGGCAGTGAAAGAGGCAAAGGGATAAGAATAGTATGTGGGGATTTCACTCTCGGAGAAAATGAGACTCAGTTTTAG 1182 0.5178 MCHNNPPPPPTPSDLTHSNPILKTQKQPADSLSLTAPRRKNRTKIRKPKFVSLRLQLFPTHHKPSSPSLGQSNPMNHQQQLNLFPLHPENIVDDKDDMQDEHNVAFLFVSDGDATLNGLLEEDSATTTTTSEEPCLGSPFDEENGSSLVRKAMKRRNKEERDGREERWVCYSEVVRKKEMMEEVTSDCSASETTTFGLLSLKLDYEGILNAWSDKGSLYVAGETPQTVPDLRDDVLPRNAANVVWKAWEVEEEGGSNSKSKMKGKEEIGCKVGQREASVLRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKDRDRESARYADCALTTARKPLLAVHSIFCQQVPLRAFKLPAASLRIRQTFSLGSATSSGSERGKGIRIVCGDFTLGENETQF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1973 393 ProSiteProfiles CCT domain profile. 275 317 IPR010402 GO:0005515
Glsi12g1973 393 MobiDBLite consensus disorder prediction 1 42 - -
Glsi12g1973 393 MobiDBLite consensus disorder prediction 1 15 - -
Glsi12g1973 393 MobiDBLite consensus disorder prediction 16 38 - -
Glsi12g1973 393 MobiDBLite consensus disorder prediction 125 144 - -
Glsi12g1973 393 Pfam CCT motif 275 311 IPR010402 GO:0005515
Glsi12g1973 393 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1973 Glsi-ChrGlsi12 35349146 35353595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1973 198 313 C2C2-CO-like Transcription Factor Family AT1G25440 42.017 1.15e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi12g1973 CCT 3.3e-13 CL0281