Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1954 ATGTCATTGCCGGATATTTCTGGTATCCTGGACATCTCCAAGGAGCTCGATCGGTTAAGAAAAGTGCAACGGGAGTTGCTTAACGAGATCAACAGGATACACAAGAAACTTCAAACCACCGAGCTGGGTTACAATAACCTTAAATTGGAGTACCCTAATCCTTGCTGGGCTGTCGGTGTTATAGCTCCTGAGGTGGTTGAGAAGTCTGGGTGTAACATATTAACAAAGCTAAAGTTCTTGTACGGTCATGCAAAAGAACTATCAGAAACTGAAGAAAAGGTAAAGTCTACTGCATTGGATACTGAAGGTAATGAGAAGAAAAAAAAACGAAGAAAGACAGATTCAGATATCTCAAGGCTATCTCCTGGAATGCGACTTGAGGTTTGTCTTAGTCTCAAGGGTGAACAGGTAGCAGCCAGGGTCAAGCCACATAATGCTGATGAGGATGAATGGCTTGTTGTCAAAGTGATTCATTTTGATAAGGAAACAAAAGAATTTGAAGTACTAGATGAGGAACCTGGTGATGATGAAGAGGGCAGTGGCCAAAGACAATACAATCTTCCAACGTCAAATATTATTCCTTTCCCCAAGAGGAATGATCCTTCTAGTGCCCCAGACTTCCCTCCTGGAACACATGTTTTGGCAGTCTATCCCGGAACTACTGCACTTTATAAAGCGACAGTTGTCGATGGCCATCGCAAGTTCAAAAAGAGTTTCTCAGAGCTAAGTGGTCTTCTTGCATCCATGGCTACACCCGGGACCCATGCGATCTCAAGCCTCTTTCAAATTCCTCGTCTGTCCTTTGTCTTCTTCGCTGAACACTTTGCAGTCATACTCACTATCGCTCTCTCTACCCGACCCGATTCGATGGCCTCTCTTGTCGGAGCACCATCTTCATTTTCTCCCTCAAAGCTCCTTCTCAAACCTTCACCACCCTCTCTATCACGTTCGCGCTCTACGCATCTCTTCCTCTGCAATCCCGGCCTGAGACCGAAAACCCTATCTTCCAAGCTCCACTCTGCCGTCTTTTCCTCCTCTTTCGTCGCTGGCGAATCTTCCATCTTCCGATACTCCCTTTTCTCTTCTCCGGAATTTGAAGATTCCTCCTCCGGCCGGCGGTCTCTGACCGTCCGAGCAGCTAGAGGAAAATTTGAGAGAAAGAAACCTCACGTTAATATTGGCACAATCGGTCACGTTGACCATGGAAAGACTACCCTGACGGCTGCTCTTACCATGGCTTTGGCCTCTATGGGAAATAGCGCGCCGAAGAAGTACGACGAAATCGATGCAGCACCAGAGGAAAGAGCCCGAGGGATCACGATTAACACTGCTACGGTGGAATATGAAACTGAGAGCAGGCACTATGCCCATGTAGATTGTCCCGGGCATGCTGATTATGTGAAGAATATGATCACCGGTGCGGCGCAAATGGACGGTGCGATTTTGGTTGTTTCGGGTGCTGATGGGCCAATGCCTCAGACCAAAGAGCACATTTTGTTGGCGAAACAAGTGGGTGTGCCCAATTTGGTAGTTTTCTTGAACAAGCAGGACCAGGTTGATGATGATGAACTTCTTCAACTGGTGGATTTGGAAGTCCGAGAGCTCTTGACCTTGTATGAATTCCCGGGTGATGATGTGCCTATAATTTCAGGTTCAGCATTGTTGGCTTTAGAGGCATTGATGGCCAACCCGAAAATTAATAGAGGAGAGAATCTGTGGGTGGATAAAATTTATGAATTGATGGATGCTGTTGACAGTTATATACCGATTCCAAAGCGACAAACTGATTTACCATTCCTCATGGCGATTGAAGACGTGTTTTCTATTACTGGTCGTGGTACTGTGGCAACAGGGCGTGTCGAGAGGGGCACAGTTAAGGTTGGGGACACTGTGGATATTGTGGGTCTTAAGGAAACCCGGACCACAACAGTTACTGGGGTTGAAATGTTTCAGAAAATACTTGATGAAGCGATTGCAGGTGATAACGTGGGGCTTTTGCTTAGGGGTATTCAGAAAACAGATATTCAAAGAGGAATGGTTATTGCCAAACACGGCACCATTACACCACATTCGAAGTTCATTGCTATTGTATATGTGTTGAAAAAGGAGGAGGGAGGGAGGCATTCGCCATTTTTTGCTGGATACAGGCCTCAATTCTACATGAGGACCACTGATGTCACTGGGAAGGTTTCCAAAATCATGAATGACAAGGATGAAGAGACTAAGATGGTTATGCCCGGTGATCGTGTGAAGATGGTTGTAGAACTAATTTTTCCAGTAGCTTGTGAACAGGGAATGAGATTTGCAATTAGAGAAGGTGGGAAGACTGTTGGGGCTGGTGTCATCCAGTCCATCATTGAATGA 2364 0.459 MSLPDISGILDISKELDRLRKVQRELLNEINRIHKKLQTTELGYNNLKLEYPNPCWAVGVIAPEVVEKSGCNILTKLKFLYGHAKELSETEEKVKSTALDTEGNEKKKKRRKTDSDISRLSPGMRLEVCLSLKGEQVAARVKPHNADEDEWLVVKVIHFDKETKEFEVLDEEPGDDEEGSGQRQYNLPTSNIIPFPKRNDPSSAPDFPPGTHVLAVYPGTTALYKATVVDGHRKFKKSFSELSGLLASMATPGTHAISSLFQIPRLSFVFFAEHFAVILTIALSTRPDSMASLVGAPSSFSPSKLLLKPSPPSLSRSRSTHLFLCNPGLRPKTLSSKLHSAVFSSSFVAGESSIFRYSLFSSPEFEDSSSGRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNLVVFLNKQDQVDDDELLQLVDLEVRELLTLYEFPGDDVPIISGSALLALEALMANPKINRGENLWVDKIYELMDAVDSYIPIPKRQTDLPFLMAIEDVFSITGRGTVATGRVERGTVKVGDTVDIVGLKETRTTTVTGVEMFQKILDEAIAGDNVGLLLRGIQKTDIQRGMVIAKHGTITPHSKFIAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSKIMNDKDEETKMVMPGDRVKMVVELIFPVACEQGMRFAIREGGKTVGAGVIQSIIE 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1954 787 CDD Tudor_SGF29_rpt1 133 199 IPR047288 -
Glsi12g1954 787 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 388 592 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 Pfam SGF29 tudor-like domain 133 235 IPR010750 -
Glsi12g1954 787 NCBIfam elongation factor Tu 380 787 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi12g1954 787 Pfam Elongation factor Tu C-terminal domain 686 785 IPR004160 -
Glsi12g1954 787 FunFam Elongation factor Tu 594 722 - -
Glsi12g1954 787 ProSiteProfiles SGF29 C-terminal domain profile. 127 315 IPR010750 -
Glsi12g1954 787 Coils Coil 9 36 - -
Glsi12g1954 787 CDD EFTU_II 599 685 IPR033720 -
Glsi12g1954 787 Pfam Elongation factor Tu domain 2 613 681 IPR004161 GO:0005525
Glsi12g1954 787 NCBIfam small GTP-binding protein domain 391 523 IPR005225 GO:0005525
Glsi12g1954 787 FunFam SAGA-associated factor 29 isoform X6 135 198 - -
Glsi12g1954 787 Gene3D - 380 591 IPR027417 -
Glsi12g1954 787 CDD EFTU_III 688 782 - -
Glsi12g1954 787 Hamap Elongation factor Tu [tuf]. 379 787 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi12g1954 787 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 686 786 IPR009001 -
Glsi12g1954 787 SUPERFAMILY Translation proteins 593 689 IPR009000 -
Glsi12g1954 787 Pfam Elongation factor Tu GTP binding domain 388 589 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 Gene3D Translation factors 594 722 - -
Glsi12g1954 787 CDD EF_Tu 389 591 IPR041709 -
Glsi12g1954 787 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 429 444 IPR031157 -
Glsi12g1954 787 FunFam Elongation factor Tu 726 786 - -
Glsi12g1954 787 Gene3D Translation factors 726 786 - -
Glsi12g1954 787 MobiDBLite consensus disorder prediction 91 117 - -
Glsi12g1954 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 607 IPR027417 -
Glsi12g1954 787 Gene3D - 135 198 - -
Glsi12g1954 787 PRINTS GTP-binding elongation factor signature 436 444 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 PRINTS GTP-binding elongation factor signature 509 518 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 PRINTS GTP-binding elongation factor signature 456 466 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 PRINTS GTP-binding elongation factor signature 472 483 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 PRINTS GTP-binding elongation factor signature 392 405 IPR000795 GO:0003924|GO:0005525
Glsi12g1954 787 Gene3D - 199 247 - -
Glsi12g1954 787 MobiDBLite consensus disorder prediction 168 195 - -
Glsi12g1954 787 PANTHER ELONGATION FACTOR TU-RELATED 376 786 - -
Glsi12g1954 787 FunFam Elongation factor Tu 379 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1954 Glsi-ChrGlsi12 35246645 35254120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1954 386 785 Eukaryotic Initiation Factors Gene Family AT5G60390 30.649 1.11e-45 168