Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1952 ATGGCGAAATCTTTACCTCTAACCCACGTGTCGTTCCTCTTATCCCGTTCCAGAGTTATGGCCTCTGCAAGACTATTCTATCAAAGGCTTCCCCCTTCAAAATTCACATCCTTTGGCAAAATAAACACTCTCTCTCTATCGCCTTCCGTACAAACTTTTTCCACCACATCCACCGCATACCCACTTCAGTACGAGATGATTATCAACCGTCCAGCTAAGTCTGAGCTTGCCCATTCTCGCCGTCGACCTGTTCGACATAATGAATCCAATTCAGAGAGCGTCCCCGAATCGAATTTACCAGAAGAACCGGTTTCAGAATTAGGATTAGATAGTTGGGTCGATCGGAAACTGGCTTCTGAAAAAGAAACTGATCAACCCAGTCCCGAAGAAGTAGAGCTTGACAAGGCTAAGAGAAAGTATTACAGTAAACGGAGGAAGAGGATGTATGGATCAGACTCTGACGAAGAAAATAGGCGACCTGAAGAGAAATTCGTGGAACTGAAGCCTGAGGTGGTGGAGCTTCCTACATTGCACAAGAGGGAGGAAGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTATAGGATGGTTTATCAGTTAGAGAAAAAATACTTTCCTGACCAGTGTCTTGATAAAGCGTTCCTTGAACCGGGAGAATCAAATGCGAAAGTGAACGTAAATGCGGATGTAAAAAGCAAGGTGAAGGAAAAGAAGAAAGTCAGAGGTGATAGAAGGGAGAAAAAATATGAGGTTGGTGATGAAAGAGATGATGGTAAATTGCTGTTCTTCGAGGAGAAACAAGAAGAAATGAATAATAAAGAATTGGTTAAGGATGCAAGAAAAGATCTAACGGAAAAGAAGGTCGAGGAGTTCTTCAAGTGTTTGAAAAAAGTCCCGAACAAGGATGTTGATGTTGGTAATGCAGAGCCATATCTTGTGTCAAGGAGTACTGGGCTACCTCCCAGATGGGAGGATCCGCATGGCACCGTACTTTTGGTGAATAAACCCAAAGGATGGACTTCATTTACAGTTTGTGGAAAGCTGCGACGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCTGGAACTCTTGATCCTATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTGGTAGAAAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGACGCTGATTCAGCCGTGATTCAACGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAGAACTGCTGCTACCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAGAAGATGTACGATAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTCGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGTTTAGATGACAGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACATATATTCGGTCACTGTGTGCAGATTTTGGGAAGGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGAAATATTCAGCAGATGATGCATGGGACTTTGACGAACTGGAAGAGGCTATTTCAAAAAGTTATTTCTAA 1662 0.4284 MAKSLPLTHVSFLLSRSRVMASARLFYQRLPPSKFTSFGKINTLSLSPSVQTFSTTSTAYPLQYEMIINRPAKSELAHSRRRPVRHNESNSESVPESNLPEEPVSELGLDSWVDRKLASEKETDQPSPEEVELDKAKRKYYSKRRKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYRMVYQLEKKYFPDQCLDKAFLEPGESNAKVNVNADVKSKVKEKKKVRGDRREKKYEVGDERDDGKLLFFEEKQEEMNNKELVKDARKDLTEKKVEEFFKCLKKVPNKDVDVGNAEPYLVSRSTGLPPRWEDPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSAVIQREPWEHIKDEDIKRTAATFCGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGKYSADDAWDFDELEEAISKSYF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1952 553 Hamap tRNA pseudouridine synthase B [truB]. 333 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi12g1952 553 MobiDBLite consensus disorder prediction 117 136 - -
Glsi12g1952 553 FunFam tRNA pseudouridine synthase B 330 552 - -
Glsi12g1952 553 MobiDBLite consensus disorder prediction 74 105 - -
Glsi12g1952 553 Pfam tRNA pseudouridylate synthase B C-terminal domain 506 549 IPR032819 -
Glsi12g1952 553 SUPERFAMILY Pseudouridine synthase 335 548 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi12g1952 553 Coils Coil 272 292 - -
Glsi12g1952 553 Gene3D Pseudouridine synthase 328 552 - -
Glsi12g1952 553 NCBIfam tRNA pseudouridine(55) synthase TruB 335 544 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi12g1952 553 Pfam TruB family pseudouridylate synthase (N terminal domain) 355 505 IPR002501 GO:0006396
Glsi12g1952 553 MobiDBLite consensus disorder prediction 74 89 - -
Glsi12g1952 553 CDD PseudoU_synth_EcTruB 336 547 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi12g1952 553 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 209 551 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1952 Glsi-ChrGlsi12 35230225 35236432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1952 301 527 NAC Transcription Factor Family AT3G57150 32.159 3.54e-20 92.4