Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1949 ATGCTCCTTCCCAATCTTTCTACTATTGTACCACCAGATCCTGTTGTTCGTCCACAAATAGCTTCATCTGAGAATGCTGTATTGCCCCCAGAATCTCCTGGGGTAATTGCTTTGATGGCAGGAAGAGACGACTTTGGAGAAGCCCCGAAATCCAATATGGTAGACAGGCCTGAAGGGTTTTTCTTCTGCCTTAACCAGTCAAGACAGTCGATGACCCCACCGAAATTGATTGTAATGGCACCACTCGATTTCCGAGCTCAACCCGCGTTGCGTGGACGAGACTTTTTATGCTTTGTGTCCGAACCAAAGGCTAATACCAGCTGCTTTAGTTTGACTCCAAGAGAGGAATCAAATGGGGTACCTGGTATTGCTGCTGTACCTCCTTTTTACTCAGAATGCTTCGTGGGAACAATTGCATTGTGGTGGATAATGATTTGGGGATTAGTCACTGTTATCATAAAGCCTCTAGAGTTTACTGTACTTCAGCATCCAGAATCATTAGCAAAACAGAGAGTTGTGTTCCTAAGATCCCATTTTTTTATATGTTCTCTGCATGCTTTTCCTCTTCCTCCCTCTCCTGTTTTCCTTTACTTGGTTGGGAAAATTCTATGGAGCTGGCTTATTGACATTGGGGGATTTGCAAAGAAAGTGAAAAACACTACTCTGTCGTCAGCTGATCAAATCAAAGACTGTGGGGCTTATCGCCAATGCCCAAATTGTCATAATCGTATTGATAACAGTGATGTTTCTCCTGAGTGGCCTGGATTTCCTATTGGTGTAAAGTTTGATCCTTCTGATGCAGAACTGCTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACGGAGCCACACATGTTTATCCATGAGTTCATTCCAACAATAGAGGGGGACCATGGTATTTGCTACACACATCCCGAAAATCTTCCTGGTGCTAAGAAAGATGGGAGCTGTGTCCATTTCTTTCACAGAACAATTAATGCATATACTACTGGTCAACGAAAGCGCCGAAAGATTCATCATCAACATAATTTGACCGAGGAGCATGTGCGGTGGCACAAGACTGGTAAGACCAAGCCTGTGATTGATGATGGAGTACATAAGGGCTTTAAAAAGATCATGGTTCTTTATGTAAGATCTAAGAAGGACTCCAAGCCATATAACTCTAATTGGGTGATGCACCAATTCCATCTTGGAACTGAAGATGAGAAGGATGGTGAATATGTGGTTTCGAAAATTTTTTATCAACAGCAGAAGCAGAATGAAAAAGACAGCAAAAAGACAGCAGTTGAAGATTCTGATGATATGACATCGCGAACAAGTCCAAAGACACCGAAACCAAATCCCCCCAGTCCTCCTCGTCCAAGAAAATCTGTTGACCGTGATGATAATATTGATGAAACTGTGCTCCTGTCACTCAACCAGGATGCCAAGTATATCCCTGGAGAATCACATGCCCCACCATCTGATGTTCAGGAAGAAGAGAATACAGGCAGCCCTGCATGGCTGGCTGGTGAATCACAGGCTGTTGAAAACTCTGACTTTGATGGCTTGGATGACATCTTATTGTGCAAGGAAATCTTAGATTCGTCTTGTTTTTTAAATGATTCTGGATTGAACTGCACCACTCTTAATGGCATTGCTTGCAACACAAACAAGTTGGCTGGACAAGATAATTTATCCTATGGAATTTCTGACCTGGATAACCTGGAATTGGATACTCCTCCAGATTTCCAACTTTCTAATTTGCAATATTGTTCTGAAGACAGTATCCTTGAGTGGATAGACAGATTATGA 1797 0.4246 MLLPNLSTIVPPDPVVRPQIASSENAVLPPESPGVIALMAGRDDFGEAPKSNMVDRPEGFFFCLNQSRQSMTPPKLIVMAPLDFRAQPALRGRDFLCFVSEPKANTSCFSLTPREESNGVPGIAAVPPFYSECFVGTIALWWIMIWGLVTVIIKPLEFTVLQHPESLAKQRVVFLRSHFFICSLHAFPLPPSPVFLYLVGKILWSWLIDIGGFAKKVKNTTLSSADQIKDCGAYRQCPNCHNRIDNSDVSPEWPGFPIGVKFDPSDAELLEHLAAKCGIGNTEPHMFIHEFIPTIEGDHGICYTHPENLPGAKKDGSCVHFFHRTINAYTTGQRKRRKIHHQHNLTEEHVRWHKTGKTKPVIDDGVHKGFKKIMVLYVRSKKDSKPYNSNWVMHQFHLGTEDEKDGEYVVSKIFYQQQKQNEKDSKKTAVEDSDDMTSRTSPKTPKPNPPSPPRPRKSVDRDDNIDETVLLSLNQDAKYIPGESHAPPSDVQEEENTGSPAWLAGESQAVENSDFDGLDDILLCKEILDSSCFLNDSGLNCTTLNGIACNTNKLAGQDNLSYGISDLDNLELDTPPDFQLSNLQYCSEDSILEWIDRL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1949 598 Pfam No apical meristem (NAM) protein 257 398 IPR003441 GO:0003677|GO:0006355
Glsi12g1949 598 ProSiteProfiles NAC domain profile. 256 416 IPR003441 GO:0003677|GO:0006355
Glsi12g1949 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 205 511 IPR044799 GO:0003700
Glsi12g1949 598 FunFam NAC domain-containing protein 8 265 420 - -
Glsi12g1949 598 MobiDBLite consensus disorder prediction 417 463 - -
Glsi12g1949 598 MobiDBLite consensus disorder prediction 419 439 - -
Glsi12g1949 598 MobiDBLite consensus disorder prediction 476 498 - -
Glsi12g1949 598 Gene3D NAC domain 265 421 IPR036093 GO:0003677|GO:0006355
Glsi12g1949 598 SUPERFAMILY NAC domain 242 416 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1949 Glsi-ChrGlsi12 35211090 35216926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1949 234 434 NAC Transcription Factor Family AT4G28500 52.451 2.81e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g1949 NAM 1.7e-18 No_clan