Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1943 ATGGAGAATGAGGTTGTCGAAAGCCTACGGAACGGTGATAGAGAAGCGCAAATTCAAGCAGCAATGGAGCTAAGTAGATTAAGCAGCAAGCAGAGGCACAAGTTGGCAGAAAGTGGAATCGTGGTACCTCTGGTTTCTATGCTTCACTCACAAGACTCTGAGGCCATTGAAGCTTCTGTGTGTGCTCTGCTCTGTCTTGCCTTTGGCAGTGAACGAAACAAGATTCGGATCGTCAATTCTGGAGCTTTACCAGTGTTGTTGGATCTCCTCCAATGCGAAAGCCAAGGACTGGTAGAATTGACAATAGCTGCCATGCTAACCCTCTCTTCTTGCAAGGCAAATAAGGTAGCAATTGCTTCGTCTGGGGCTATCCAGCTATTGGTTCAAGTTCTCAACGACAATGCCCACTATGCAAATAGCAAAAACTCTCAGTCCCAGCTTGATGCTGTAGCCACTCTCCATAACCTCTCGACATGCCAAGAGACTATACCTGTGATTGTCTCTTCTGGTGTTATAATCTCCTTGCTTGAACTGATTCACAGCTCAGTAAAATCATCTGAATTGGTAGAGAAAGCAATTGGGTTGCTGGAAAATATTTTGTATTCATCAGAGAATGCACTTTGTGAGGCTGTTAGTGTAGGTGGGGCAATTAGGGTACTGGTTGAGACTATTGAAGATGGGACTTTGCTAGGGAAAGAGCATGCAGTGGGGATACTCCTTCTCATATGCCAGAGCTGCAGAGAAAAATACAGAGGATTGATATTGAAAGAAGGAGTGATGCCTGGGCTGCTTCAGTTAAGCGTGGATGGAACGCAGAGGGCAAAAAATATGGCTCGAGAATTGTTGTTGCTTCTGAGGGAATGCTCCAATTATAGTTCAAGAAGTAAACAGATTAACCACGGGCTTATAGAACAGATCATGCAGGAAATTGATGCGGAAGGGGAAAAATTGGTTGGAACCACTTTAAGCTTGGTAGAGGAAATGATTGCGAAGCTCAATACATGA 1005 0.4448 MENEVVESLRNGDREAQIQAAMELSRLSSKQRHKLAESGIVVPLVSMLHSQDSEAIEASVCALLCLAFGSERNKIRIVNSGALPVLLDLLQCESQGLVELTIAAMLTLSSCKANKVAIASSGAIQLLVQVLNDNAHYANSKNSQSQLDAVATLHNLSTCQETIPVIVSSGVIISLLELIHSSVKSSELVEKAIGLLENILYSSENALCEAVSVGGAIRVLVETIEDGTLLGKEHAVGILLLICQSCREKYRGLILKEGVMPGLLQLSVDGTQRAKNMARELLLLLRECSNYSSRSKQINHGLIEQIMQEIDAEGEKLVGTTLSLVEEMIAKLNT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1943 334 Gene3D - 212 317 IPR011989 -
Glsi12g1943 334 PANTHER U BOX DOMAIN-CONTAINING 3 288 - -
Glsi12g1943 334 Gene3D - 3 211 IPR011989 -
Glsi12g1943 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 170 205 IPR000225 GO:0005515
Glsi12g1943 334 SUPERFAMILY ARM repeat 4 319 IPR016024 -
Glsi12g1943 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Glsi12g1943 334 FunFam U-box domain-containing protein 4 207 323 - -
Glsi12g1943 334 SMART arm_5 28 68 IPR000225 GO:0005515
Glsi12g1943 334 SMART arm_5 111 158 IPR000225 GO:0005515
Glsi12g1943 334 SMART arm_5 70 110 IPR000225 GO:0005515
Glsi12g1943 334 SMART arm_5 159 201 IPR000225 GO:0005515
Glsi12g1943 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 171 IPR000225 GO:0005515
Glsi12g1943 334 FunFam U-box domain-containing protein 4 3 204 - -
Glsi12g1943 334 Pfam Armadillo/beta-catenin-like repeat 113 157 IPR000225 GO:0005515
Glsi12g1943 334 Pfam Armadillo/beta-catenin-like repeat 71 99 IPR000225 GO:0005515
Glsi12g1943 334 Pfam Armadillo/beta-catenin-like repeat 28 63 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1943 Glsi-ChrGlsi12 35164354 35165846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1943 4 286 U-box Gene Family AT3G54790 34.146 8.66e-31 121