Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1941 ATGAGGAGAAGGAATGAGGTTACAGAGATTTCTTGCTCTGCATTCCCCTTTATCTTCTGTGATCAGTACGGTTTCAGGATTTCTTGGATGGAGTCACCTGTAAGTGGAGTTGAGTCTTTATCTGAGGTTCAGAATTCGGTTTCTGCAGTAGATCACGACCCTCCTTCAACATCTGGGACTCCCCGGCCTTCCCGGCCTCCCTTAAGAGCACCTAGAAATCATGTGGCTTCTTCCACATCATATTTGTCTGGTCATCATAGTCATGGAATGAAGACCACTCACCATCAAAAAAGCTATGTAATTAATCAAAAGCATTCCTATCAGGAGGCCAACAATGTGCAGCATGAAGAATTACCAAATCTGGCAAAGCAATGTCACAGTTCTAGTGGAAAATCTGGCACTGTGAGTAGTCTCCATAAATCTGGAGAAAGTTATTCAGGGAAGAATATCTCTACAATGGATACAAAATTGTGCATCAAGCAAACTTTTGATGATTCCAAGATTTGTGATTCAAATGGAATGTTAGAATCAGGAAATTATGTGTTAGGCTCATCTAAAGGAGTAGTTGATCATACAAAAAGTTACTCTCAGTCAGAGGTTACTTTTTGTCCAAGTCCTCAGACTAGCTTCTATTCTGCCACTGTGTATTCAGAAGCCAAACAAAGCTTCACCAATACTGAAGTCAGTGAATGTGTTAGTGTTGATAAATCAGGTGAAAGTTGTGAGGTTACTAATTCTTGTGATCTTAACGAGAGCAGGAAGACTAGCATCTGTAGAGGGAGTACTGGAAGTGATGTTAGTGATGAGAGCAGCATCAGTAGTTTGAGCAGTGCTTTATATAAACCCCACAAGTCAAATGATATTAGATGGGAAGCAATTCAAGCTATCCGAGTTCGTGATGGGATGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGATATAGGAAGTGTTCATCTAGCAGAGTTGAGTGGCACGAGGACCTGTTTTGCAATGAAAATTATGAATAAAACAGAGCTGGCAAGTCGCAAGAAGCTTCTGAGGGCTCAGACAGAAAGAGAGATATTGCAGTCTCTGGATCACCCTTTTCTACCCACATTATATACACATTTTGAGACAGAGACATTCTCTTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGATCTGCATGCAATGAGGCAGAGACAACCGAGGAAGTACTTTTCAGAGCATGCCGCTAGGTTCTATGTGGCGGAAGTTCTTCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTTAAACCTGAGAACGTGTTGGTGAGAGAAGATGGTCATATAATGCTCTCAGACTTTGACCTCTCCCTAAGGTGCGTTGTCAGTCCAACTCTAGTAAAGTCTTCAAACTCCAGCTTGGAAACAAGAAGCTCAGGATACTGCATTCAGCCGGCTTGCATTCAGCCAACTTGTGTAATGCAGCCAGATTGCATCCAACCTTCATGTTTCACACCACGTTTCTTATCTGGCAAATCCAAGAAAGAAAAAAAGGTTAAGCCAAAGAATGAAATGCATCATCAAGTGACTCCTCTCCCCGAGCTCATTGCTGAGCCCACAAGTGCCCGATCAATGTCCTTTGTGGGTACACACGAATACTTGGCACCTGAGATCATCAAAGGTGAAGGGCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTTTTGTTTGGTAGAACACCATTCAAGGGTTCAGTGAACCGAGCAACTCTGTTCAACGTGGTTGGCCAGCCATTGAGATTTCCAGAATCCCCTACAGTGAGCTTTGCTGCTAGGGACTTGATTAGGGGTTTGCTCGTGAAAGAACCTCAGCATCGTCTAGCCTATAGACGTGGAGCTACAGAGATTAAACAACACCCATTCTTTCAGAATGTTAACTGGGCGCTGATCCGTTGTGCAACTCCTCCAGAGGTGCCTAGGCTGGCCATGAAAGAAGTGGCAGCCGAGAAAGTAGCCGGTGTGAAGCCTTCTGGTAACTATTTAGATATCGATTTCTTTTGA 2070 0.4348 MRRRNEVTEISCSAFPFIFCDQYGFRISWMESPVSGVESLSEVQNSVSAVDHDPPSTSGTPRPSRPPLRAPRNHVASSTSYLSGHHSHGMKTTHHQKSYVINQKHSYQEANNVQHEELPNLAKQCHSSSGKSGTVSSLHKSGESYSGKNISTMDTKLCIKQTFDDSKICDSNGMLESGNYVLGSSKGVVDHTKSYSQSEVTFCPSPQTSFYSATVYSEAKQSFTNTEVSECVSVDKSGESCEVTNSCDLNESRKTSICRGSTGSDVSDESSISSLSSALYKPHKSNDIRWEAIQAIRVRDGMLEMRHFRLLKKLGCGDIGSVHLAELSGTRTCFAMKIMNKTELASRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHAMRQRQPRKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLVKSSNSSLETRSSGYCIQPACIQPTCVMQPDCIQPSCFTPRFLSGKSKKEKKVKPKNEMHHQVTPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCATPPEVPRLAMKEVAAEKVAGVKPSGNYLDIDFF 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1941 689 SUPERFAMILY Protein kinase-like (PK-like) 281 664 IPR011009 -
Glsi12g1941 689 SMART serkin_6 308 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1941 689 ProSiteProfiles Protein kinase domain profile. 308 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1941 689 Gene3D Transferase(Phosphotransferase) domain 1 392 458 - -
Glsi12g1941 689 Pfam Protein kinase domain 542 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1941 689 Pfam Protein kinase domain 309 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1941 689 CDD STKc_phototropin_like 306 665 - -
Glsi12g1941 689 MobiDBLite consensus disorder prediction 45 96 - -
Glsi12g1941 689 MobiDBLite consensus disorder prediction 73 87 - -
Glsi12g1941 689 Gene3D Transferase(Phosphotransferase) domain 1 540 663 - -
Glsi12g1941 689 MobiDBLite consensus disorder prediction 124 146 - -
Glsi12g1941 689 FunFam Serine/threonine-protein kinase D6PK-like 306 391 - -
Glsi12g1941 689 FunFam serine/threonine-protein kinase D6PK-like 392 459 - -
Glsi12g1941 689 FunFam serine/threonine-protein kinase D6PK-like 540 663 - -
Glsi12g1941 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Glsi12g1941 689 Gene3D Phosphorylase Kinase; domain 1 306 391 - -
Glsi12g1941 689 PANTHER FLIPPASE KINASE 1-RELATED 112 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1941 Glsi-ChrGlsi12 35150230 35156828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1941 216 689 AGC Kinase Gene Family AT5G47750 70.935 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi12g1941 Pkinase 6.4e-37 CL0016