Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1939 ATGGACTCACCCATCAACGACCCTGTTGTTGACGGAGAAGCTGACGACGTTAGGTCCTTTGCTCACCGAGAAGAAGAAGACATGGACAAGTCTCAGCCTCTTAGCGGCGATGGAGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTAATAATGAAGGACCGGAAGACTGGGCAACCTCGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTTGATCAAGTTATTGAGGAGACACATATTATTAATGGAAAACAAGTGGAAATTAAGCGTACAATACCAAGGGGAGCCGTTGGCTCTAAGGATTTCAGGACGAAGAAAATTTTTGTGGGTGGAATTCCCTCAACCGTGACTGAAGATGAGTTTAGTGAATTTTTTACACATTATGGAGAGGTCAAAGATCACCAAATAATGCGGGACCATTCCACCAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGACTCTGAGGAGGCAGTTGAAGATCTCCTAGCTAAGGGGAACAAGATTGATTTTGCTGGGGCTCAGGTGGAAATCAAGAAGGCTGAGCCAAAGAAGGCAAACGCCCCACCACCACCATCTAAACGCTATAATAATGAGTCAAGATCTTCATTCGGTGGTGGATATGGAGATGCTTATGATGGATTTAGTAGCAGCTTTGGTGTTGGAGGATATAGGTCTGGTGGGGTCTATGGTGGTAGGGGTGGTGCTTATGGTGGCTATGGTAGTGAATTTGGTGGTTATGGAGGATATGCCAGTGCAATGGGGCCCTATAGAGGAGACCCCTCCCTTGGGTACTCTGGTCGTTATGGAGGTGGCTTTAGCAGAGGTTATGATCTTGGAGGATATGGTGGTGGACCTAGTGAGAGTTATGGGGGATATGGTGGTGTTGGTTCATCTAGTGGTGGTGCCTATGGCAGCGGGTATGATGCCAGCCTAGGGGGTGGATATGGTGGAAGTGGTGGAGGTTCCTTCTATGGGAGTAGAGGTGGATATGGGGGTACTGGTGCAGGGACTGGTCGATATCATCCTTATGGAAGATAG 1116 0.4695 MDSPINDPVVDGEADDVRSFAHREEEDMDKSQPLSGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDQVIEETHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFSEFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLAKGNKIDFAGAQVEIKKAEPKKANAPPPPSKRYNNESRSSFGGGYGDAYDGFSSSFGVGGYRSGGVYGGRGGAYGGYGSEFGGYGGYASAMGPYRGDPSLGYSGRYGGGFSRGYDLGGYGGGPSESYGGYGGVGSSSGGAYGSGYDASLGGGYGGSGGGSFYGSRGGYGGTGAGTGRYHPYGR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1939 371 SUPERFAMILY RNA-binding domain, RBD 126 233 IPR035979 GO:0003676
Glsi12g1939 371 MobiDBLite consensus disorder prediction 1 39 - -
Glsi12g1939 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Glsi12g1939 371 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Glsi12g1939 371 Gene3D - 123 239 IPR012677 -
Glsi12g1939 371 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 25 371 - -
Glsi12g1939 371 MobiDBLite consensus disorder prediction 205 227 - -
Glsi12g1939 371 MobiDBLite consensus disorder prediction 11 32 - -
Glsi12g1939 371 SUPERFAMILY RNA-binding domain, RBD 35 120 IPR035979 GO:0003676
Glsi12g1939 371 SMART rrm1_1 43 114 IPR000504 GO:0003723
Glsi12g1939 371 SMART rrm1_1 131 204 IPR000504 GO:0003723
Glsi12g1939 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Glsi12g1939 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 104 IPR000504 GO:0003723
Glsi12g1939 371 Gene3D - 42 121 IPR012677 -
Glsi12g1939 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1939 Glsi-ChrGlsi12 35137893 35143004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1939 29 196 Eukaryotic Initiation Factors Gene Family AT1G71770 28.652 2.66e-11 63.2