Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1936 ATGCAGAACGGCAGAGGCCCGAAGGTGCTTGCTTCTGTCACTAGAAACATGTCCGTGAAGCCAAATTGGACTCCTTTCCCGCAGAGCAAATTTCGCCTTTCTTTCTTTTCCAAAGCGAATGGCTTCACTTGCAAAACCAAAACCCAGTCTTTGTTTTCCTTCAGAAGCTTGAATAGTGCCAAGTTGCAGTGCTATAATAGCTTCGAAGTTAGAAATTTGAAAAATTCTCACCAATTATGTGTGTCAGAGAATGAGGAGTACGGGAACGTTGATTCTGGGTCCCACAAGATTTTAACGAAATGGGTTGACTTTGTTCGGTCCATTTCACCAGGTGGGAGCTGGTGGAACTTATCTGAGCATCAGGAAGACGATACTGAAGCGGCGAAGCCAATGACGGCACTGCTCGCCGTTCGTCGAATGTGGGAATTAATTTCCGATGAGAGATGGATCATATTTGTGGCATTTGGTTCCCTTGTCATCGCTGCTCTTGCAGAGATTTCCATGCCAAGTATATTGGCCGCGTCAATATTTTCAGCACAGACTGGTGAGACCGTGAGGTTCTATAGGAACGCACAGTCTTTACTTGTATTGTGTTTCACTTCAGGGATATGCAGTGGTCTGCGAAGTGGCTGCTTTGCAATTCTGAATGTGATCTTGGTAAAGCGTCTACGAGAAAATTTATACACATCTCTTATTTTTCAGGACATATCCTATTTTGATAGAGAACAAGTTGGTGACTTGACAAGCAGGCTTTCAGCAGATTGCCAACGATTATCTTATGTTGTAGGAAATGATCTTCATATGATAATACGCAACACTTTGCAGGGAACAGGAGCAGTAATTAATTTGCTGACTTTATCATGGCCTCTGGCATTGTCTACCTTGGTGATTTGCTCTATTTTATCTGCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTTGTGCCAATGAAGTAGCACAGGAAACACTTCATTTAATAAGAACAGTCCGAGCCTATGGTACAGAAAGAGAAGAATTTGTAAGGTACAAGAAATGGCTGTCTAGATTAGCATTTGTAAACACTCGAGAGAGTTTGGCCTATGGGTTCTGGAATCTGAGTTTTAACACCCTTTACCGTTCTACTCAGATATTTGCAGTGCTGTTAGGAGGGATGTCTGTCCTCAGTTGTTGTGTAACTGTGGAACAACTTACTAAGTATGTATTATACTGTGAGTGGCTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCAAGTGAAAAAGTTTTCCAGTTGATGGATCTTTTGCCTAGTGACCAATTCTTATCTAAAGGTGTGAAATTGCAGAGGTTAATGGGGCATATTCAGTTCGTAAATGTATCATTTTGTTATCCTACTAGGATTATGATGCCTATTCTAGAACGCTTAAACTTCTGTGTAGAAGCAAATGAAGTGATTGCGATAGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTAGTCAACCTTTTGCTTCGTCTATATGACCCAAGTAATGGTCAGATTTATATTGATGGATTCCCTCTAAGAGAGTTGGATATCAGGTGGCTGAGACAAAACATTGGATATGTTGCACAGGAACCACATCTCTTTCACATGGACATCAAGTCAAACATAAGATATGGATGCCCTGGAGACATCAAACAGGAAGATATTGAACGGGCAGCGAAGCAGGCATATGCTCATGAATTTATTTGTTTGCTTCCTAATGGCTATGAAACCATTGTTGATGATGATTCGCTCAGTGGGGGACAAAAGCAACGAATTGCTATCACTAGGGCCATTCTTAGGGACCCAGTTATAATGATACTTGATGAAGCAACCAGTGCTTTAGATTCTGAGAGTGAGCATTATATCAAGGAGGCGCTGTATACATTAAAAAATGAATCTAAAGCAAGAACTATCATTATCATAGCACATAGGCTTTCTACCATAAAAGCTGCTGACAGAATCTTCGTAATGGACAATGGTCGCATCATTGAGATGGGTAACCACGAAGAGCTTCTGGTCAAAGATGGGCTCTATGCTAAATTGTATAAAGGGCAAGCAGATATTTTGAGTTGA 2136 0.4125 MQNGRGPKVLASVTRNMSVKPNWTPFPQSKFRLSFFSKANGFTCKTKTQSLFSFRSLNSAKLQCYNSFEVRNLKNSHQLCVSENEEYGNVDSGSHKILTKWVDFVRSISPGGSWWNLSEHQEDDTEAAKPMTALLAVRRMWELISDERWIIFVAFGSLVIAALAEISMPSILAASIFSAQTGETVRFYRNAQSLLVLCFTSGICSGLRSGCFAILNVILVKRLRENLYTSLIFQDISYFDREQVGDLTSRLSADCQRLSYVVGNDLHMIIRNTLQGTGAVINLLTLSWPLALSTLVICSILSAIFLVYGQYQRKAAKLTQDFTACANEVAQETLHLIRTVRAYGTEREEFVRYKKWLSRLAFVNTRESLAYGFWNLSFNTLYRSTQIFAVLLGGMSVLSCCVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKVFQLMDLLPSDQFLSKGVKLQRLMGHIQFVNVSFCYPTRIMMPILERLNFCVEANEVIAIVGLSGSGKSTLVNLLLRLYDPSNGQIYIDGFPLRELDIRWLRQNIGYVAQEPHLFHMDIKSNIRYGCPGDIKQEDIERAAKQAYAHEFICLLPNGYETIVDDDSLSGGQKQRIAITRAILRDPVIMILDEATSALDSESEHYIKEALYTLKNESKARTIIIIAHRLSTIKAADRIFVMDNGRIIEMGNHEELLVKDGLYAKLYKGQADILS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1936 711 Gene3D - 457 709 IPR027417 -
Glsi12g1936 711 SUPERFAMILY ABC transporter transmembrane region 138 451 IPR036640 GO:0005524|GO:0016020
Glsi12g1936 711 CDD ABC_6TM_TAP 154 441 - -
Glsi12g1936 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 467 705 IPR003439 GO:0005524
Glsi12g1936 711 PANTHER ABC TRANSPORTER B FAMILY 121 703 IPR039421 -
Glsi12g1936 711 SMART AAA_5 494 682 IPR003593 GO:0016887
Glsi12g1936 711 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 152 433 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1936 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 706 IPR027417 -
Glsi12g1936 711 FunFam Multidrug ABC transporter ATP-binding protein 459 709 - -
Glsi12g1936 711 Pfam ABC transporter transmembrane region 152 415 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1936 711 Pfam ABC transporter 485 633 IPR003439 GO:0005524
Glsi12g1936 711 Gene3D ABC transporter type 1, transmembrane domain 132 451 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1936 Glsi-ChrGlsi12 35118770 35126867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1936 222 706 Calmodulin-binding Proteins AT2G36910 35.146 2.51e-76 265