Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1929 ATGGACATTCCTAAACCTCGATCCCTCTTCCGCCACATCACGTCAAGAGAGCTGAATGGCTTCAGAGTTCGGAAACGGGCATACATGGAGGGGATCGCGTCTGATTTCACCGAAATCGGAGCAATAGCTATAGAACACAATGGTAGCGAGACTCCTCCCTTGGCTGTCTCATTCTGCAAGACCTCCAAAAATTCTCACATCCTTGCTTTGTCCGACGAGGATGGATATGTGAGCCTGTTTGATACTCGCCGCAAGTTTCCCCCTTCCTCATCGTACCAAGAAAATGCAGAGAAAGCAAAGATTTGCGATTGGGTTGCCCATCATAATGCTGTTTTTGACGTCTGTTGGATTAAGGAAGATACCCAGGTTCTCACAGCTTCTGGTGATCAAACGATGAAGTTATGGGATGTGCAAGAAAAGAAATGTATAGGAGTGTTGATGGGGCACACGGGAAGCGTGAAATCAATGTGTTCTCATCCAACTAATGCTGATATTGTTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTTTGGGACTTGAGATGCAACTCCACCCCCAAAAGTAGGCGTGGGGAACTTTGCATATGTTCAACAGCAGCAGTCACAGGAGCACATCTTTCATCCCAAGCAAAACGATTCCGAAGGGGCAAGGCTGCTTCCATGAGCATTACATCAGTTCTTTATCTCAAGGATCAGATTTCTGTTGCTACTGCTGGGGCGGTGGATAGTGTCGTGAAGTTCTGGGATACCAGGAACTTGAAAAGTTTTGTCACCCAGACATGGCCTCATCTCCAGACAACGGAAAAGGAAAGATTACATGGCATATCTAGCTTGTCCCAAGATCAAAGTGGAATGTTTATTTCAGCTTCCTGCATGGATAACAGAATATACTTGTATGACGTACTTCAGCTTGAAAAGGGGCCTTTGAGATCGTTTTCTGGATGTCGAATAGAATCATTTTTTGTGAAGTCTGCAATTAGTCCGGATGCAACTCACATAGTTAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGCAGGTTAACAAGCCTCGCGAGGAACCTATTACTTTGAAAACTCATGATGGGGAAGTTACTGCAGTTGATTGGTGCCACTCTGAGGATGGCAAGTTAGCAACCTCCTCTGATGATTTCACAGTTCGGATTTGGAATAATAACAGTTGTTTCTCAAGCACAGAATCTCCAGTTTCCATCCGGAGGAGAATAATGGCAATGCCTAGTAAAGAAAGCCAAAGGCTTTTAATGAACGACGAGGAATTGTGTCCCAAATTAGGTCCTAACAATGCTTTTCTTTCTGACGAAGCACTACATGAATTTAACCAAGCCATTCCAATTACACCACCAAAAAAGCATAAAACTGAAGACCACAAGAACCAGTTTTCAACTGGGTCTGATCTCACTGAATCATCTGAAAAAACTCCGGAATCTGCTTTGAAGAGCCCCTCTTCTGTTTTGAACCCACCATCCTCTCTAAAGAGAACTATAAGGGATTACTTTCTGGCAGCTTCATGA 1530 0.4405 MDIPKPRSLFRHITSRELNGFRVRKRAYMEGIASDFTEIGAIAIEHNGSETPPLAVSFCKTSKNSHILALSDEDGYVSLFDTRRKFPPSSSYQENAEKAKICDWVAHHNAVFDVCWIKEDTQVLTASGDQTMKLWDVQEKKCIGVLMGHTGSVKSMCSHPTNADIVVSGSRDGSFCLWDLRCNSTPKSRRGELCICSTAAVTGAHLSSQAKRFRRGKAASMSITSVLYLKDQISVATAGAVDSVVKFWDTRNLKSFVTQTWPHLQTTEKERLHGISSLSQDQSGMFISASCMDNRIYLYDVLQLEKGPLRSFSGCRIESFFVKSAISPDATHIVSGSSDGNAYVWQVNKPREEPITLKTHDGEVTAVDWCHSEDGKLATSSDDFTVRIWNNNSCFSSTESPVSIRRRIMAMPSKESQRLLMNDEELCPKLGPNNAFLSDEALHEFNQAIPITPPKKHKTEDHKNQFSTGSDLTESSEKTPESALKSPSSVLNPPSSLKRTIRDYFLAAS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Glsi12g1929 509 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Glsi12g1929 509 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Glsi12g1929 509 Pfam WD domain, G-beta repeat 106 136 IPR001680 GO:0005515
Glsi12g1929 509 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 265 300 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 97 136 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 35 81 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 305 346 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 209 249 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 350 390 IPR001680 GO:0005515
Glsi12g1929 509 SMART WD40_4 139 179 IPR001680 GO:0005515
Glsi12g1929 509 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Glsi12g1929 509 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Glsi12g1929 509 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Glsi12g1929 509 Gene3D - 35 189 IPR015943 GO:0005515
Glsi12g1929 509 MobiDBLite consensus disorder prediction 451 496 - -
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 355 IPR001680 GO:0005515
Glsi12g1929 509 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 507 - -
Glsi12g1929 509 MobiDBLite consensus disorder prediction 468 496 - -
Glsi12g1929 509 SUPERFAMILY WD40 repeat-like 55 393 IPR036322 GO:0005515
Glsi12g1929 509 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Glsi12g1929 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Glsi12g1929 509 Gene3D - 190 417 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1929 106 345 U-box Gene Family AT1G04510 22.677 1.18e-10 62.0