Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1899 ATGCAAGCTCACCACCACTCCTCTGCTAAATCTTCCTTTCCACTCGCCGTCGATGCCGATCACAAAGCCACCCAGTTCCGGCCATTTTCTCTAGCCCCACCCCACATGCGCTCCTTCCATCTTGCATGGATTAACCTTTTCTCTTGCTTCTTCGCCGCCTTCTCCATCCCTCCGCTCCTTCCCATCATTCGGAACGACCTCCACCTCACCCCCACCGACATCGGCAACGCCGGTATTGCCTCTTTTATGGGTTCCATCTTCTCTCGCCTCTTGATGGGTCCCATCTGCGACCTTGTCGGCCCCCGCGTAGCCTCCGGCACTCTCTCCCTCCTCACTGCCCCTGTCATCCTTGCAACCGCCTTCGTGTCCACACCCCTAGCCTTCATTATGGTTCGCTTCCTTGTGGGGTTCTCACTGGCCAATTTTGTGTCCAACCAGTTCTGGATGTGCTCCATGTTCTCCAGCTCCATAGTTGGCTTAGCCAACGGTGTTTCAGCGGGGTGGGCTAACGTGGGCTCTGGTGTGACTCAACTAGTTATGCCTCTCGTCTACTCCCTCATCATGTACTTCAACGTTCCATCTTTCGCTGCTTGGAGGCTTGCCTTCATAGTCCCTACAATTTTCCTAGCAATCACAGGAATCTTGGTCCTGGCATTGGGGCAAGACCTACCTTCGGGAAGCTATGTGCGTTCCCAGAAAGCTCAAAAAGAGAACATATGCAAGGTTCTAGGTCACGGGTTATCAGATTATAGAGGGTGGATTTTGGGTTTGCTCTATGGGTTCTCTTTTGGAGTGGAGCTAACTACAGATAACATCATAGCGCAGTATTTTTATGATAGGTTTAACGTGAATATCCAAACTGCTGGCACGATTGCAGCCAGTTTTGGAATGGCGAATTTATTTTCTCGGCCAATGGGAGGGATGATTTCGGATGAAATGGCCAAGAGATTTGGTATGAGAGGAAGGTTGTGGGGTCTGTGGGTGGTCCAAACAGTGGCTGGACTTCTGTGTGTGTTGCTTGGACGACTTAACTCTCTCTGGAGTTCTATCCTTGTCATGTGTAGCTTCTCTATATTTGTTCAAGCTGCTTCTGGCCTCACGTTCGGTGTGGTTCCTTTCGTTTCCAAGCGATCGCTTGGAGTAATTTCAGGAATGACGGGCAGCGGAGGGACAATTGGGGCGGTGGTGACTCAAATGCTGTTGTTTTCAGGGGCCAACATGTCAAAGCAAACAAGCATATCTCTAATGGGCCTTATGATGATAGTCTGCACTCTTCCAGTGACCTTGATGTATTTCCCTCAATGGGGAGGCATGCTCTGTGGCCCTTCCACAGATCACGATTCAGCTGAAGCAAGTTATCAGATGCTAGGATAG 1374 0.5051 MQAHHHSSAKSSFPLAVDADHKATQFRPFSLAPPHMRSFHLAWINLFSCFFAAFSIPPLLPIIRNDLHLTPTDIGNAGIASFMGSIFSRLLMGPICDLVGPRVASGTLSLLTAPVILATAFVSTPLAFIMVRFLVGFSLANFVSNQFWMCSMFSSSIVGLANGVSAGWANVGSGVTQLVMPLVYSLIMYFNVPSFAAWRLAFIVPTIFLAITGILVLALGQDLPSGSYVRSQKAQKENICKVLGHGLSDYRGWILGLLYGFSFGVELTTDNIIAQYFYDRFNVNIQTAGTIAASFGMANLFSRPMGGMISDEMAKRFGMRGRLWGLWVVQTVAGLLCVLLGRLNSLWSSILVMCSFSIFVQAASGLTFGVVPFVSKRSLGVISGMTGSGGTIGAVVTQMLLFSGANMSKQTSISLMGLMMIVCTLPVTLMYFPQWGGMLCGPSTDHDSAEASYQMLG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1899 457 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 5 453 IPR044772 GO:0015112
Glsi12g1899 457 SUPERFAMILY MFS general substrate transporter 25 431 IPR036259 -
Glsi12g1899 457 Gene3D MFS general substrate transporter like domains 236 436 IPR036259 -
Glsi12g1899 457 FunFam Nitrate transporter 2.1 236 437 - -
Glsi12g1899 457 ProSiteProfiles Major facilitator superfamily (MFS) profile. 38 435 IPR020846 GO:0022857
Glsi12g1899 457 FunFam Probable high-affinity nitrate transporter 2.4 31 226 - -
Glsi12g1899 457 Pfam Major Facilitator Superfamily 43 396 IPR011701 GO:0022857|GO:0055085
Glsi12g1899 457 CDD MFS_NRT2_like 39 429 IPR044772 GO:0015112
Glsi12g1899 457 Gene3D MFS general substrate transporter like domains 35 231 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1899 Glsi-ChrGlsi12 34714430 34716092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1899 1 456 Inorganic Solute Cotransporters AT5G14570 61.263 0.0 587