Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1896 ATGAATCCACCATGGTTTCTCATTGCCATCACTTTCCTTTTGTCTCTCCCCCACTCGCTGTCCGATCCACGAATCTCGGAAGCCGGGCTCTTGTGCGACACCGCCAAAGCCCCCCCAAAGGCCAACTATATCCCCAGCTTCATCAAAGAAATGGAGAGCCTCTCCCAGCTGGTTACCACCCACAATTGGGGTACCCACTCTGTCAACGACTCAACCACTCCCATTTACGGCTTTGCTCAGTGCTTCCAAGACCTCTCCCACACTGATTGCCTTCTCTGCTATGCTGCAAGCCGCACTAAACTCCCCCGCTGCCTCCCCTCTGTCTCTGCTCGCATTTACCTCGATGGCTGCTTCCTACGCTATGACAACTACAGCTTCTACTCAGAAGACATCGACCCTTCAAGGGACACTGTTAATTGCAGCTCCCAATATGGTGGGGTGGCTGATGAAGCTGAAAGGTTGGAGCTTGCCAAGAGTGTCGGCGAAGTGATTGACAATGTGAGCGCGATTGCTACGGCAAAGAGAGGGTTTGCTGTGGGAGAAGTTAAGGGAGTTTACGCCTTGGCTCAATGTTGGAAGACTGTCGGGACATCAGGGTGCCTAACTTGCTTGAAGAAAGCGGGAAAAGAGGTCAGAGGGTGCTTGCCCAACAGGGAAGGGAGGGCCTTGAATGCTGGGTGCTATTTGAGATATTCGACCGAGAAATTCTACAACGAAGATGGTGAAGCAGAGGGTGGAAATGGGTCATTTAGAAGAGGAGCCATCATAGCGATAGTGTTAGCTGCGGTTGCAGTTTTAATGCTCTTTCTCTCTGCCTCTTATGCAGCCTTCTCAAGACTATCGAAGCTGAATAAAGGAAGCAATAATCTTGGTCAGATTTCCGTTTCCATAAACAAATCAAGTTTGAATTTCAAATACGAAACTCTTGAGAAGGCTACGGATTATTTCAATTCTTCAAGAAAAATTGGCCAAGGAGGAGCTGGTTCTGTATTTAAAGGTACTCTCTCAAATGGGAAGGTTGTAGCTGTCAAGAGATTGGTCTTCAATACCAGGCAATGGGTTGACGAGTTCTTCAACGAAGTGAATTTGATTAGCGGAATCGAGCACAAGAACCTTGTAAAACTTTTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTATACGAGTACCTACCGAACAAGAGCTTGGATCAATTCATTTTCGAAAAGAACAAAACCCAGATTCTGAATTGGAAGCAGCGGTTTGATATAATTCTTGGAGCAGCAGAGGGGCTTGCATATCTTCACGCAGGCTCTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGCAACGTTCTTCTGGACGAGAATCTCACTCCTAAGATTGCAGACTTTGGCCTTGCCCGGTGTTTTGCTGCTGACCAAACACATCTTAGCACCGGAATTGCTGGAACAATAGGGTATATGGCTCCTGAGTATCTTATTCGAGGACAACTTACGGATAAAGCTGATGTGTATAGTTTTGGAGTACTGGTTCTGGAGATTGTATGTGGCAGGAGGAGCAATGTCTTCAGAGAGGACTCTGGTTCCCTTCTACAAACAATTTGGAAACTATACCGATCAAACAATCTGGCTGAAGCTGTTGATCCTTGCTTAGGAGATGATTTTCCAGTAACAGAATCGTCAAGGGTGCTTCAAATTGGGCTGTTATGCACACAAGCTTCTGCTTCCCTGAGGCCATCCATGGCCGAAGTTGTCCACCTGTTGAGTAATTCAAATGTGGATGTTCCATTACCAAATCAACCCCCTTTTTTGAACACTGGAGTGCTAAACTCAGACAGCTCCATTAGGTCTTACAGCACAAACAGCTATGTATCAAATGCATTGAAGAAGATTGGAATGTCCTACAGCTCCTCAGAGTCCTGTAGTATGCGCAGTTCAGATGGGCCATCAAGAAGTGAAGAACCAAATTTACCAGCCTGA 1968 0.4649 MNPPWFLIAITFLLSLPHSLSDPRISEAGLLCDTAKAPPKANYIPSFIKEMESLSQLVTTHNWGTHSVNDSTTPIYGFAQCFQDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYSEDIDPSRDTVNCSSQYGGVADEAERLELAKSVGEVIDNVSAIATAKRGFAVGEVKGVYALAQCWKTVGTSGCLTCLKKAGKEVRGCLPNREGRALNAGCYLRYSTEKFYNEDGEAEGGNGSFRRGAIIAIVLAAVAVLMLFLSASYAAFSRLSKLNKGSNNLGQISVSINKSSLNFKYETLEKATDYFNSSRKIGQGGAGSVFKGTLSNGKVVAVKRLVFNTRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKNKTQILNWKQRFDIILGAAEGLAYLHAGSKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFAADQTHLSTGIAGTIGYMAPEYLIRGQLTDKADVYSFGVLVLEIVCGRRSNVFREDSGSLLQTIWKLYRSNNLAEAVDPCLGDDFPVTESSRVLQIGLLCTQASASLRPSMAEVVHLLSNSNVDVPLPNQPPFLNTGVLNSDSSIRSYSTNSYVSNALKKIGMSYSSSESCSMRSSDGPSRSEEPNLPA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1896 655 Gene3D Transferase(Phosphotransferase) domain 1 392 591 - -
Glsi12g1896 655 FunFam Cysteine-rich receptor-like protein kinase 3 139 236 - -
Glsi12g1896 655 Gene3D Phosphorylase Kinase; domain 1 277 391 - -
Glsi12g1896 655 ProSiteProfiles Protein kinase domain profile. 316 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1896 655 Pfam Salt stress response/antifungal 47 124 IPR002902 -
Glsi12g1896 655 Pfam Salt stress response/antifungal 158 233 IPR002902 -
Glsi12g1896 655 FunFam Cysteine-rich receptor-like protein kinase 2 278 391 - -
Glsi12g1896 655 ProSiteProfiles Gnk2-homologous domain profile. 25 126 IPR002902 -
Glsi12g1896 655 Gene3D - 147 236 IPR038408 -
Glsi12g1896 655 Gene3D - 28 126 IPR038408 -
Glsi12g1896 655 ProSiteProfiles Gnk2-homologous domain profile. 134 236 IPR002902 -
Glsi12g1896 655 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 76 613 - -
Glsi12g1896 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Glsi12g1896 655 MobiDBLite consensus disorder prediction 633 655 - -
Glsi12g1896 655 SUPERFAMILY Protein kinase-like (PK-like) 301 613 IPR011009 -
Glsi12g1896 655 Pfam Protein tyrosine and serine/threonine kinase 319 584 IPR001245 GO:0004672|GO:0006468
Glsi12g1896 655 CDD STKc_IRAK 322 584 - -
Glsi12g1896 655 SMART serkin_6 316 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1896 655 MobiDBLite consensus disorder prediction 633 648 - -
Glsi12g1896 655 FunFam Cysteine-rich receptor-like protein kinase 2 25 126 - -
Glsi12g1896 655 FunFam Cysteine-rich receptor-like protein kinase 2 392 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1896 Glsi-ChrGlsi12 34695410 34698237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1896 12 481 Receptor kinase-like Gene Family AT5G40380 57.749 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi12g1896 PK_Tyr_Ser-Thr 3.4e-45 CL0016