Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1895 ATGGAGACCCCTCTTCTGCCTTTGACAATTCTTGTCTTCTTTCTATCTTTCTGTCTAGGCCATGGCCATGCAAACTCGCAAACGGATATAGTTGCACGCTCATGCAGGAGTGTTAATGTCCGCGACAAGGATAAGTATGTAGGCACCTATCGGAAACTGATTGGCGAGATGTGGGGAGAAATGGGTCGTAACAAATCTTCCTCGAAGGAAGCAGGTGACCCCCCTGATCGTCTCTATCTATTCTCGCAGTGCATGGATGATGTTTCGAGTTCAGAATGTAAAACTTGCTTCGAAAGCGTTGGTCGCTTTCTTTCTAGTTGCTTTCCTGCCACGGGTGGTCGCGCTTATTCAGATGGTTGCTTTATTAGGGCAGAGAACTATAGTTTCTATAGGGAAAGCGTCGGTCCTGATGATTTAAAGGCACCAGAACGAGGAGGTTTTATATTAATGCAAGAGAAATTGCCTTCGGGTTTGGCAGTCTTTGGTTTAGCTACCTGTTGGAAGACGTTGGACCATGATATGTGTTCTGCATGCCTTGCGAATGCAGCTAGCACTTCCTTATCCTGCTTACCATCAACGCAAGGCCGTGTGCTCAATGCTGGCTGCTTTCTACGTTATGCTGATTATGACTTCACCAATGATGGAAGCCAGGGAGAAAAAAGAGATACTGTAGTAAAGTACGTTGCATACGTTTTTGCTGCAATTGCCATATGTTCACTGGCTGTTTTGATTGGATACTGTGTTGGTAAATCCACTTACAAGCTAAGTAGTCTTCAAAGCGAAAGAGAAGGACTGGAGATTTTAAAGAGGAACTTGCAGTTCATACAATTCAGGTACTCGACATTAGAAAAAGCAACTGATGACTTTAATGAATCCCATAAGCTTGGTCAAGGAGGACACGGTGAAGTATACAAGGGAACCTTACCAGATGGTAGAGAAATTGCAATAAAACGTATGATTTCAAGTGGTACAAGAGGGACAGAAGATATTTTCAATGAAATGGATGTAATCAGTAGAGCTCAACACAAGAATCTGGTTCGTTTCCTTGGCTTCTGCTTCACAACAGTTGAAAGTTTTCTCATCTATGAATTTCTTCCAAATGGATGCCTCAGCCACTTCTTATTCGTTGTCAATGATCTAGAACATGAACAGGGTTTAGAAAAAGTTTCTTTTGACTTAGAAAGCAAGAAAGAAGGAAAGCTCGCGATGAATCTAATTGAGCGTTTTGCACGGGGGAAGACTTTGTTGCAGCTGCCCAGTGCTGAATTCAACATCAAATGA 1281 0.4278 METPLLPLTILVFFLSFCLGHGHANSQTDIVARSCRSVNVRDKDKYVGTYRKLIGEMWGEMGRNKSSSKEAGDPPDRLYLFSQCMDDVSSSECKTCFESVGRFLSSCFPATGGRAYSDGCFIRAENYSFYRESVGPDDLKAPERGGFILMQEKLPSGLAVFGLATCWKTLDHDMCSACLANAASTSLSCLPSTQGRVLNAGCFLRYADYDFTNDGSQGEKRDTVVKYVAYVFAAIAICSLAVLIGYCVGKSTYKLSSLQSEREGLEILKRNLQFIQFRYSTLEKATDDFNESHKLGQGGHGEVYKGTLPDGREIAIKRMISSGTRGTEDIFNEMDVISRAQHKNLVRFLGFCFTTVESFLIYEFLPNGCLSHFLFVVNDLEHEQGLEKVSFDLESKKEGKLAMNLIERFARGKTLLQLPSAEFNIK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1895 426 SUPERFAMILY Protein kinase-like (PK-like) 267 378 IPR011009 -
Glsi12g1895 426 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Glsi12g1895 426 Pfam Protein tyrosine and serine/threonine kinase 292 375 IPR001245 GO:0004672|GO:0006468
Glsi12g1895 426 ProSiteProfiles Gnk2-homologous domain profile. 28 129 IPR002902 -
Glsi12g1895 426 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 80 378 - -
Glsi12g1895 426 Pfam Salt stress response/antifungal 39 127 IPR002902 -
Glsi12g1895 426 Pfam Salt stress response/antifungal 159 209 IPR002902 -
Glsi12g1895 426 SMART tyrkin_6 289 423 IPR020635 GO:0004713|GO:0006468
Glsi12g1895 426 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 265 364 - -
Glsi12g1895 426 Gene3D - 26 129 IPR038408 -
Glsi12g1895 426 Gene3D - 142 211 IPR038408 -
Glsi12g1895 426 Gene3D Phosphorylase Kinase; domain 1 249 364 - -
Glsi12g1895 426 ProSiteProfiles Protein kinase domain profile. 289 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1895 Glsi-ChrGlsi12 34690006 34693601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1895 5 375 Receptor kinase-like Gene Family AT4G28670 40.865 1.42e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi12g1895 PK_Tyr_Ser-Thr 2.2e-13 CL0016