Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1889 ATGGAGTTTGATCCAAACTTCCGAGAGAGTTTTCCCTTACTTTCTGGGCTTTTCCCAGAAAATCCTTCAAAACCACCGGAGTTGTCAGTGTCGCCTATGGCTCCCTTACAAAGCTCGTCGGCCAATAACCCCTTTTTTCATCCCAACAATAACCATTTCCACCACTTTCAACAGCATCCGGCCGTGAGTGGGTCTAACCCAGTTTTTGTGAAGGAGGATCCTTCCTCTATCCCCTTCTCCGGGATCCCAGCCCCTCCGGGTGTTGCTTTCGAGGCTTACGCAAATGGGTCCTCGAGAGATTTCGTCAACACCTACAACATCATGCCGTCCGCCACACACAACAAAATGGATGCCTTGCATGGCTACCACACTGGCAGAGGCTTCTGGGACTTGTCGCAGAAAATTCCAGTTCAATCTGGTGCCCACACCCACGTGATGATGATGATGGGTCCTAGGCTTCAAGATGAGCTTTCATGCATCGCCGGGAATAATGGCTGGGACAACGCTGATCAGAGAGCCGACGAAGACGACAAGAAGAAGATGGTGCAGATGCGCAGGGTTAGTAGCAGAGCTCAGAAGATCAACGCTAACATCATCAAAGGCCAGTGGACACCCGATGAGGACAGGCTGCTGGTGCAACTGGTGGAGAGATTTGGAATGAAGAAGTGGTCTCAAGTTGCTAAAATGCTGAGTGGGAGGGTGGGAAAGCAGTGTAGAGAGAGATGGCACAACCATCTGCGACCGGACATTAGGAAGGACTCGTGGACAGAGGAAGAAGATAAGATCCTAATCGAAGCCCACCAAGAAATAGGGAATAAGTGGGCAGAAATCGCACGCAGGTTGCCTGGAAGAACTGAGAACACAATAAAGAACCACTGGAACGCCACAAAGCGTCGCCAGAACTCCAAGAAACACAAGAACAAGGCCACCACTTCCAAGAGTTCTCTGCTTCAGGACTACATCAAGCAAGTCACTGCTGCCCAAGCTGCTTCAAAGCAGGATCACTACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGCGTCAACCTCCAAGTTCACTATGAAAGCTCGGCCTCAGAAGATGACATAAGCTCCGGCGACTGGGCCATCGAGGTGTACGCACAGGAGGAAGAGGTGGGTTTGAGTCTGGAGCACAAGGAGATGGCATCGGGTGCGTCGTCAATGGTGGATCATGACTATGAGATAGCAATGGAGATGAACAGCTTGGTTCGTGAGGAATACATAAAGAAGGAGATGGATCTGATGGAGATGATCTGTGGAAAGCATTAA 1305 0.4866 MEFDPNFRESFPLLSGLFPENPSKPPELSVSPMAPLQSSSANNPFFHPNNNHFHHFQQHPAVSGSNPVFVKEDPSSIPFSGIPAPPGVAFEAYANGSSRDFVNTYNIMPSATHNKMDALHGYHTGRGFWDLSQKIPVQSGAHTHVMMMMGPRLQDELSCIAGNNGWDNADQRADEDDKKKMVQMRRVSSRAQKINANIIKGQWTPDEDRLLVQLVERFGMKKWSQVAKMLSGRVGKQCRERWHNHLRPDIRKDSWTEEEDKILIEAHQEIGNKWAEIARRLPGRTENTIKNHWNATKRRQNSKKHKNKATTSKSSLLQDYIKQVTAAQAASKQDHYNNNNNNNNNNNNNNNGVNLQVHYESSASEDDISSGDWAIEVYAQEEEVGLSLEHKEMASGASSMVDHDYEIAMEMNSLVREEYIKKEMDLMEMICGKH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1889 434 SMART sant 199 248 IPR001005 -
Glsi12g1889 434 SMART sant 251 299 IPR001005 -
Glsi12g1889 434 CDD SANT 254 297 IPR001005 -
Glsi12g1889 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 301 IPR017930 -
Glsi12g1889 434 SUPERFAMILY Homeodomain-like 197 293 IPR009057 -
Glsi12g1889 434 ProSiteProfiles Myb-like domain profile. 195 246 IPR001005 -
Glsi12g1889 434 MobiDBLite consensus disorder prediction 283 354 - -
Glsi12g1889 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 250 IPR017930 -
Glsi12g1889 434 CDD SANT 203 246 IPR001005 -
Glsi12g1889 434 MobiDBLite consensus disorder prediction 311 354 - -
Glsi12g1889 434 PANTHER MYB PROTEIN-RELATED 174 331 - -
Glsi12g1889 434 Gene3D - 199 251 - -
Glsi12g1889 434 FunFam Transcription factor MYB119 253 317 - -
Glsi12g1889 434 Gene3D - 254 315 - -
Glsi12g1889 434 FunFam Transcriptional activator Myb isoform A 199 252 - -
Glsi12g1889 434 MobiDBLite consensus disorder prediction 296 310 - -
Glsi12g1889 434 Pfam Myb-like DNA-binding domain 203 259 - -
Glsi12g1889 434 ProSiteProfiles Myb-like domain profile. 247 297 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1889 Glsi-ChrGlsi12 34628424 34630517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1889 143 324 MYB Transcription Factor Family AT4G18770 54.787 3.34e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1889 Myb_DNA-bind_6 1.8e-17 CL0123