Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1888 ATGGCTGCAACTGCAACTGCCTCTGCAGTGGGTCCTAGATATGCACCACCAGACCCAACCCTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTTACCCAATATGAGAGGCCCACAAGCTCAGCTCCCTCGCCAAAGTCCTCCTCAGTGCCTAGTTCTTCTGTCCAGGTTCAACAATCATCTCAAGGTCAGCATCGTGGCCACAGTCCTGATTTGAATAATAGGTATGGTAGAAACGGTGGATCAAACTTTGAAGCTGGATCACGAAACCATCAGATTCCAAAAGGTGGAAGTTCTAATTCTCATGTTCCAAATGGGACCCACGCTGCTGGAAATGTTGGTTCTTCTGTGAAGGGTCATGGAGTATCAGATGCTGGAGCCGGAATAACTCCAGAGTCCTATCGCCGTCGCCATGAAATAACTGTTACTGTGAGTGCGATATTCGCTCCTGGGGAGGAGCTAATGTCGTACGCTGTGGTACACAATGCTGGTTTCTCTGCCCCAACACCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGTTCTGGGAAGACCTTGGGATATTTAATCCCGGGATTTATCCACCTCAAACGCGTTGCTAAGGACTCCAAAATGGGTCCCACTGTATTGGTATTGTCACCAACAAGGGAGCTGGCAACACAGATACAGGATGAAGCTGTGAAGTTTGCAAAATCATCCAGAATTTCCTGTGTATGTTTGTACGGAGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACAGAGGAGCAGATATTGTGGTTGCCACACCTGGCCGCTTGAATGATATTCTCGAGATGAGGAGAATTAGTCTTCATCAGATCTCTTACCTTGTGCTAGATGAGGCTGACCGAATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAAGGAAGTACCTGCACGGCGGCAAACCCTCATGTTTACTGCAACATGGCCTAGGGAGGTTAGGAAAATTGCAGCTGATCTACTGATCAATCCTGTTCAGGTTAACATTGGCAGTGTCGATGAGCTTGTTGCTAATAAGTCCATTACACAGCATATAGAAGTATTGGCACCAATAGAGAAGCACAGACGATTGGAGCAGATATTGCGGTCACAGGATACAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGACCAACTTGCTCGTAATCTTACACGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGACTGAGAGGGACCATGTGTTGAATCAGTTCCGTACTGGGAGGTCTCCTGTGCTTGTAGCAACAGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGAGTGGTTGTCAACTATGACTTCCCTACTGGTGTGGAGGACTATGTTCATAGGATTGGAAGGACTGGGAGGGCAGGAGCCACTGGTCTGGCTTATACATTTTTTGGAGACCAGGATGCTAAATATGCTTCTGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTCCCTCCAGAACTTCATGATATGGCATCACGTGGTGGTGGGATGAACAGAGTCAGACGATGGGGTTCTGGTGGCCGCGGGGGACGTAGTGATTCTGGATTTGGGGGAAGGGGTGGCGATTCTGGATATGGCGGAAGGAGCAGCAATTCTGGTTACGGTGGAAGGGGTGGATTGGGAACCACTCCTGGCCGAGGTGGAGGCCGTGCATATGACTATGACTCACAGAGGAATGATCGTGGTTACTCTGGACATGACATGGATACCCGTGGGAAGTATGATAAAGGACGTAGTCACAGCCGAAGCCCTGATAAATGGGGTGATCGCAGTAAAAACTTCAACCATGATCGCAGCCGTAGTCGTAGTCCCAACAAGCATGACAGTGCCGCACCTCATCAACATCCCCAAGTTTACAGTTTCCACAATACGATGATGGAGCGCAAAGGGGACAGTGATCACAAGAAAAGCTTTGATCAGGATCAAAGCTGTAGTCGTAGCCCTTTTAAACATGATAGGGCTCCACCGGCTCGGGAACGTTCTCCATTTTATAGTTTTCATCAATCAATGATGGAACGTGGTCAGTCTTCTCCCTCATCTCAGAAGCAGCATGTTCCCCCTTACAGTGATTCTAGTTGTAAAGACGGCAAAGGTTCAAGAAGTCCGTACCGAACTACTTCACCATCCTCCCGTGGTGGTATTAGGTTGAACAATAGTCCCCGACAGGAATGGAGAGGATCTCATGGAAATAGGTTGTTTGATGGAAGATATGGTGGATCTCATTCTTCCTGCCATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGGCATGACATCTCAAGATGATGGCATATACCGGGCTGTGGATTAG 2448 0.4747 MAATATASAVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAPSPKSSSVPSSSVQVQQSSQGQHRGHSPDLNNRYGRNGGSNFEAGSRNHQIPKGGSSNSHVPNGTHAAGNVGSSVKGHGVSDAGAGITPESYRRRHEITVTVSAIFAPGEELMSYAVVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVAKDSKMGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQISYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPREVRKIAADLLINPVQVNIGSVDELVANKSITQHIEVLAPIEKHRRLEQILRSQDTGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQTERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQRVPPELHDMASRGGGMNRVRRWGSGGRGGRSDSGFGGRGGDSGYGGRSSNSGYGGRGGLGTTPGRGGGRAYDYDSQRNDRGYSGHDMDTRGKYDKGRSHSRSPDKWGDRSKNFNHDRSRSRSPNKHDSAAPHQHPQVYSFHNTMMERKGDSDHKKSFDQDQSCSRSPFKHDRAPPARERSPFYSFHQSMMERGQSSPSSQKQHVPPYSDSSCKDGKGSRSPYRTTSPSSRGGIRLNNSPRQEWRGSHGNRLFDGRYGGSHSSCHGEEEEGMIPDEGMTSQDDGIYRAVD 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1888 815 MobiDBLite consensus disorder prediction 47 143 - -
Glsi12g1888 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 514 IPR027417 -
Glsi12g1888 815 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Glsi12g1888 815 SMART ultradead3 177 380 IPR014001 -
Glsi12g1888 815 Gene3D - 11 58 - -
Glsi12g1888 815 SMART helicmild6 417 497 IPR001650 -
Glsi12g1888 815 CDD WW 22 52 IPR001202 GO:0005515
Glsi12g1888 815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 363 IPR014001 -
Glsi12g1888 815 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Glsi12g1888 815 SMART ww_5 20 53 IPR001202 GO:0005515
Glsi12g1888 815 Gene3D - 368 539 IPR027417 -
Glsi12g1888 815 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 309 317 IPR000629 -
Glsi12g1888 815 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 536 IPR001650 -
Glsi12g1888 815 Pfam Helicase conserved C-terminal domain 389 497 IPR001650 -
Glsi12g1888 815 MobiDBLite consensus disorder prediction 1 27 - -
Glsi12g1888 815 MobiDBLite consensus disorder prediction 671 703 - -
Glsi12g1888 815 Gene3D - 145 367 IPR027417 -
Glsi12g1888 815 FunFam ATP-dependent RNA helicase RhlB 367 539 - -
Glsi12g1888 815 MobiDBLite consensus disorder prediction 713 770 - -
Glsi12g1888 815 SUPERFAMILY WW domain 13 53 IPR036020 GO:0005515
Glsi12g1888 815 MobiDBLite consensus disorder prediction 47 125 - -
Glsi12g1888 815 CDD SF2_C_DEAD 377 506 - -
Glsi12g1888 815 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 165 536 - -
Glsi12g1888 815 MobiDBLite consensus disorder prediction 598 654 - -
Glsi12g1888 815 MobiDBLite consensus disorder prediction 530 815 - -
Glsi12g1888 815 Pfam DEAD/DEAH box helicase 182 352 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1888 Glsi-ChrGlsi12 34620897 34625508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1888 173 535 Eukaryotic Initiation Factors Gene Family AT3G19760 33.787 1.57e-60 209