LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1886	ATGGCTTCCACTGTGAGAATAGCCGGTAGTGATTCCATGATTGTTGATAAGCTCCCTGAGGAGATCAATGAAATGAAGATCAAGGATGAAAAGGAAATTGAGGCAGCTATGGTAGATGGAAATGGAACTGAAACTGGCCACATTATTGTGACTACAATTGGTGGTCGAAATGGTCAACCCAAACAGACCATAAGTTACATGGCCGAGCGTGTTGTTGGACAAGGTTCATTTGGTATTGTGTTTCAGGCTAAGTGTCTTGAAACCGGAGAAACTGTAGCAATCAAGAAGGTTTTGCAGGATAAAAGATATAAGAACCGTGAATTGCAAACAATGCGCCTTCTTGATCATCCTAATGTTGTGTCACTCAAGCACTGCTTCTTTTCTACCACAGACAAGGATGAACTCTATCTCAATTTGGTACTTGAGTACGTACCTGAGACTGTATATCGGGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTGATATATGTCAAACTCTACACATATCAGATTTGCAGAGCTTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCATAGAGACATTAAACCTCAGAACCTACTGGTTAATCCCCATACCCATCAGGTCAAGCTTTGTGATTTTGGAAGTGCAAAAGTTCTGGTCAAAGGTGAACCTAATATATCATATATTTGCTCTCGTTACTATCGAGCACCTGAACTCATTTTTGGGGCAACTGAATATACTACTGCAATTGATATGTGGTCTGTGGGTTGTGTCCTTGCTGAGCTGCTCCTGGGACAGCCTTTATTCCCTGGAGAAAGTGGAGTTGATCAACTTGTTGAGATTATCAAGGTACTTGGGACGCCAACTCGTGAGGAGATAAAATGCATGAATCCAAACTATACAGAATTTAAGTTCCCTCAAATCAAGGCTCATCCCTGGCATAAGATATTCCATAAGCGTATGCCCCCAGAAGCTGTAGATCTTGTTTCAAGACTCCTCCAGTACTCTCCAAATTTACGATGCACTGCTTTGGATGCATGTGTCCACCCATTTTTCGATGAACTTCGCCATCCTAGTACCCGTCTTCCCAATGGGCGCCCTTTGCCTCCTCTTTTTAACTTTAAACCTCATGAGCTAAAAGGAGCAACATTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAGCAGTGTCCATCCCTGAATTTCTAG	1209	0.4301	MASTVRIAGSDSMIVDKLPEEINEMKIKDEKEIEAAMVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDACVHPFFDELRHPSTRLPNGRPLPPLFNFKPHELKGATLELLCKLVPEHARKQCPSLNF	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1886	402	CDD	STKc_GSK3	61	353	IPR039192	-
	Glsi12g1886	402	Pfam	Protein kinase domain	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1886	402	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	30	396	-	-
	Glsi12g1886	402	SMART	serkin_6	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1886	402	FunFam	Glycogen synthase kinase-3 beta	50	145	-	-
	Glsi12g1886	402	ProSitePatterns	Protein kinases ATP-binding region signature.	72	96	IPR017441	GO:0005524
	Glsi12g1886	402	SUPERFAMILY	Protein kinase-like (PK-like)	65	375	IPR011009	-
	Glsi12g1886	402	Gene3D	Phosphorylase Kinase; domain 1	50	145	-	-
	Glsi12g1886	402	ProSiteProfiles	Protein kinase domain profile.	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1886	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
	Glsi12g1886	402	Gene3D	Transferase(Phosphotransferase) domain 1	146	394	-	-
	Glsi12g1886	402	FunFam	Shaggy-related protein kinase kappa	146	394	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1886	Glsi-ChrGlsi12	34602153	34606634	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1886	72	358	Core Cell Cycle Gene Families	AT1G76540	34.915	4.87e-57	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Glsi12g1886		Pkinase	7.2e-65	CL0016