LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1882	ATGGACAAAAAACCGTGCAACTCATCTCAGGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATCTTGATTAACTATATCGCAAATCATGGTGAAGGTGTATGGAACTCCTTAGCCAAGGCTGCTGGTCTTAAACGTACTGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCAGAGGAACAGCTCTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCAAAAATCGCGAAGCATCTACCGGGAAGAACTGACAATGAGATAAAGAATTACTGGAGGACCAGAATCCAGAAGCACATGAAGCAAGCTGAGAACTTTCAGCAACAGAGTTCTGAGATAAATGAGCCAGGTAGCAGCAGCCAAGTGTCTACCATGGCTGATCAGCCAATAGATACCTACTCTCCATCTTCATTTCAAGGGAATCTGGAGCCCTTTCCAACTCAACAATTTCCCACTCAAGTCATTGATCAGTCCAGTTGTACCAGCTGTGAAAACAACTATTGGAGCATGGAGGATCTCTGGTCCATGCAATTACTTAATGGGGATTAA	603	0.4511	MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHMKQAENFQQQSSEINEPGSSSQVSTMADQPIDTYSPSSFQGNLEPFPTQQFPTQVIDQSSCTSCENNYWSMEDLWSMQLLNGD	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1882	200	Gene3D	-	73	141	-	-
	Glsi12g1882	200	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
	Glsi12g1882	200	FunFam	Myb-related protein 305	73	142	-	-
	Glsi12g1882	200	MobiDBLite	consensus disorder prediction	124	147	-	-
	Glsi12g1882	200	CDD	SANT	73	112	IPR001005	-
	Glsi12g1882	200	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Glsi12g1882	200	SMART	sant	68	116	IPR001005	-
	Glsi12g1882	200	SMART	sant	15	65	IPR001005	-
	Glsi12g1882	200	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	11	63	IPR017930	-
	Glsi12g1882	200	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
	Glsi12g1882	200	CDD	SANT	18	63	IPR001005	-
	Glsi12g1882	200	Pfam	Myb-like DNA-binding domain	69	112	IPR001005	-
	Glsi12g1882	200	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Glsi12g1882	200	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	11	136	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Glsi12g1882	200	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Glsi12g1882	200	Gene3D	-	16	68	-	-
	Glsi12g1882	200	FunFam	Myb transcription factor	16	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1882	Glsi-ChrGlsi12	34572553	34575823	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1882	10	200	MYB Transcription Factor Family	AT3G01530	61.026	6.30e-79	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi12g1882		Myb_DNA-binding	6.5e-15	CL0123