Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1873 ATGGAGCATATATCAAAAAGAAAATTTCCTCTCAGTGCAAAAGATTATAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGCGCCACTGTGCACAGGGCTCTCTGTATTCCACTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTTGAAAAGTGCAATAATGATCTGGATGGCATCAGGAGAGAGGTACAGACAATGATCTTGATTGATCATCCAAATCTTTTACGGGCACATTGCTCTTTCACTACTGGACACAACCTTTGGGTTGTGATGCCATACATGGCTGGGGGGTCCTGCCTTCATATAATGAAATCTGCATATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCGGGAGGTTCTCAAAGCACTTGTGTATCTTCATGCCCATGGGCACATTCATAGAGATGTTAAGGCTGGGAATATTTTAATTGATTCTAATGGTGCAGTCAAATTAGCTGACTTTGGAGTGTCAGCTTGTATGTTTGACGCTGGAGATAGGCAACGGTCGAGAAATACTTTTGTTGGAACTCCCTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAAGCAGACATTTGGTCATTTGGTATAACAGCACTTGAACTAGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCAATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCTGGTCTTGATTACGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGATATGGTATCCACCTGCTTAGTGAAGGACCCAAAGAAACGGCCAACTTCAGAAAAGCTTCTAAAGCACCCTTGCTTTAAACATGCACGCCCCACTGACTATCTAACTCGCACCATTCTAGATGGACTTTCTCCATTAGGAGATCGATTTAGAATGCTGAAGGCAAAAGAGGCAGATTTACTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAACTATCACAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTCAACCTCGAGGACTTAAAAAGTCAAGCTGCTCTTATTCAAGACGATGACATGCCAAATGTGGAAGAACCAGACATGGGTAAGAAGCTAAAGGACAGGTCTGATGATAATGGGGTTCCAGCAGAAGGGTTATTTCCTGTAGCAACTAACCCAACTAACCATTCAGATGCTACACCCACACTGGACAAAGAGAATGGGTTCAACGATCTTCAGGATTTGGAGAGTTCACTTGCTGCATTTCCAATTAAACCTCTTCAAGCACTTAAAGGTTGTTTCGATGTTTGTGAGGATGAAGTAAATAATACTACTCTGAGGGATTTGGATCAGGATTCTGGAAGAAATAAGAATGAAACGTCCGGGCTGACTAGTTCATTGCCACAGAATGCTATTACTGAGCATAAAAAGTTTTTGAGTGGTTCTCTGCTACCTGATAATTTTCTTTCTTCAAAAAAGGCTGTCACTGAAGGGGACAGGGATTATTTACAAGCAAAATATGGTTCTGACCGGAATCATAGTGGTCCATTGTTATATCGTCTGAAGAGAGACACCAACAACCTTTCATCTGTTGATGATGCATCAGAAGGAGCAGTTATCCAGCGCAAGGGTCGGTTTAAGGTTACATCAGCAGATCTCAGTTCCCAGGGCCCTCCAAACTGCACTTTTGGCCCCATTAATGGAGGTTCTATCAGTCCACCAAATCAGAACCATACAGTTGCCTCTATTCTTCCATCACTGCAGTTCATTTTGCAACAGAACAGTTTGCAAAGGGAAGAAATTATAAAATTAATAAAGTATGTGGAACAATCTTGTGGCAAAAATACAGAATTTTCAGATGCTGGAATAGTTGATCTTTTGGAGGTGCCACCTGCAACAACAAGGGAGAGTGAGCTGCAATCGCAGGTGCTTCAACTACAACAGAGCATTGGGAGTCTTGCGGAGGAATTGCAAAGACAAAAAATGAGAAATGCCCAGTTAGAGAAGCAGTTGAACTCTATGGTCAACAGAGTGGAAGATTGTAGAGAAAGGTGA 2043 0.417 MEHISKRKFPLSAKDYKLYEEVGEGVSATVHRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMILIDHPNLLRAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGAVKLADFGVSACMFDAGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKDMVSTCLVKDPKKRPTSEKLLKHPCFKHARPTDYLTRTILDGLSPLGDRFRMLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDMPNVEEPDMGKKLKDRSDDNGVPAEGLFPVATNPTNHSDATPTLDKENGFNDLQDLESSLAAFPIKPLQALKGCFDVCEDEVNNTTLRDLDQDSGRNKNETSGLTSSLPQNAITEHKKFLSGSLLPDNFLSSKKAVTEGDRDYLQAKYGSDRNHSGPLLYRLKRDTNNLSSVDDASEGAVIQRKGRFKVTSADLSSQGPPNCTFGPINGGSISPPNQNHTVASILPSLQFILQQNSLQREEIIKLIKYVEQSCGKNTEFSDAGIVDLLEVPPATTRESELQSQVLQLQQSIGSLAEELQRQKMRNAQLEKQLNSMVNRVEDCRER 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1873 680 MobiDBLite consensus disorder prediction 359 376 - -
Glsi12g1873 680 Coils Coil 646 680 - -
Glsi12g1873 680 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Glsi12g1873 680 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Glsi12g1873 680 MobiDBLite consensus disorder prediction 443 465 - -
Glsi12g1873 680 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Glsi12g1873 680 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1873 680 SUPERFAMILY Protein kinase-like (PK-like) 14 303 IPR011009 -
Glsi12g1873 680 MobiDBLite consensus disorder prediction 386 403 - -
Glsi12g1873 680 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539
Glsi12g1873 680 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1873 680 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Glsi12g1873 680 MobiDBLite consensus disorder prediction 353 404 - -
Glsi12g1873 680 CDD STKc_OSR1_SPAK 14 277 - -
Glsi12g1873 680 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1873 680 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1873 Glsi-ChrGlsi12 34507558 34517590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1873 1 673 MAP Kinase Kinase Kinase Kinase AT5G14720 67.681 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Glsi12g1873 Pkinase 3.9e-58 CL0016