Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1856 ATGGCTGCCGCTTCTACTCCGACTGCACCATCCCACATCAAAGCTTGGGTCTATTCTGAATACGGAAAATCAGCTGATGTTCTCAAGTTTGATCCTAATGTTCCTATACCTCAAGTCAAGGAAGACCAGGTACTCATCAAGGTTGTCGCTGCAGCCCTTAATCCCGTTGACTATAAGAGAATGGATGGGTATTTCAAGCACACTGACTCTCCTTTTCCTACTGTTCCAGGATATGATGTTGCTGGCGTAGTGGTGAAAGTGGGAAGTCAAGTGAAGAAATTTAAGGTTGGGGATGAAGTATATGGTGACATCAATGAGCATGGTTTGGATCACCCAAAGGTCTTTGGCACTTTGGCGGAGTATACAGCTGCAGAAGAAAAAGTGTTGGCTCACAAGCCACCAAATCTGAGCTTCCTTGAGGCCGCTAGTCTTCCTTTAGCCATCGAGACTGCTTATGAAGGCCTCGAGCGTTCTGAGTTTTCTGCTGGGAAATCCATCCTTGTTCTGGGAGGCGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCCAAGCATGTTTATGGCGCATCCAAGATAGCAGCCACTTCTAGCACTGGAAAGCTGGAATTTTTGAGGAAGTTGGGTGCTGATTTCCCCATTGACTACACAAAGGAGAACTTCGAAAACTACCCGGAAAAGTTTGATGTAGTGTATGATGCAGTAGGGGAAACTGAAATTGCATTCAAGGCAGTTAAAGATGGAGGCAAAGTGGTGACCGTACTTCCTACTGGAACTCCGCCAGCTATCGGGTTCATACTTACCTCTGATGGGGCTATCTTAGAAAAACTAAGACCCTACTTTGAGAGTGGGAAGGTGAAGCCAATACTGGACCCCAAGAACCCCTTTTCATTTTCTAAGACCCTTGAAGCCTTCTCCTACCTGGAAACTGGCAGGGCCACTGGAAAAGTAGTCATCTATCCCATCCCATGA 969 0.4665 MAAASTPTAPSHIKAWVYSEYGKSADVLKFDPNVPIPQVKEDQVLIKVVAAALNPVDYKRMDGYFKHTDSPFPTVPGYDVAGVVVKVGSQVKKFKVGDEVYGDINEHGLDHPKVFGTLAEYTAAEEKVLAHKPPNLSFLEAASLPLAIETAYEGLERSEFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKIAATSSTGKLEFLRKLGADFPIDYTKENFENYPEKFDVVYDAVGETEIAFKAVKDGGKVVTVLPTGTPPAIGFILTSDGAILEKLRPYFESGKVKPILDPKNPFSFSKTLEAFSYLETGRATGKVVIYPIP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1856 322 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 322 IPR044626 GO:0016628
Glsi12g1856 322 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 163 184 IPR002364 GO:0008270|GO:0016491
Glsi12g1856 322 Gene3D - 20 318 - -
Glsi12g1856 322 Pfam Zinc-binding dehydrogenase 207 318 - -
Glsi12g1856 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 136 262 IPR036291 -
Glsi12g1856 322 SMART PKS_ER_names_mod 23 318 IPR020843 GO:0016491
Glsi12g1856 322 CDD MDR_like_2 14 318 - -
Glsi12g1856 322 Gene3D - 155 269 - -
Glsi12g1856 322 SUPERFAMILY GroES-like 11 170 IPR011032 -
Glsi12g1856 322 Pfam Alcohol dehydrogenase GroES-like domain 42 104 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1856 Glsi-ChrGlsi12 34409405 34411038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1856 66 100 Monolignol Biosynthesis Gene Families AT1G72680 57.143 2.33e-07 50.1