Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1849 ATGAAGGAGAAGAGTGAAACTGGGGGTGGTGGGTATCTGAGAGCCGATCAGATAGATCTGAAGAGATTGGATGAGCAGCTTCAAAGGCATCTGACCAGAGCATGGACTATGGAGAAGAAGAAGAAAGAAGAAGATGAGTATGGAGGGAGGTCTACCCAAACCAGGCAAGAATGGGAGATTGACCCCTCCAAACTCTTGATCAAGAGCGCCATTGCCCGGGGTACTTTTGGCTCCGTTCACCGTGGCATCTATGATGGCCAAGACGTTGCAGTGAAGCTCCTTGACTGGGGAGAAGAGGGCCATCGATCAGAAGCTGAAATAGCTTCTCTAAGAGCAGCTTTTACACAAGAAGTTGCTGTTTGGCATAAGCTTGACCATCCTAATGTAACCAAGTTCATTGGGGCAACAATGGGCACATCAGAACTGCACATGGAAAATGGTCATATAGGCATGCCCAATAATGTTTGTTGTGTTGTTGTTGAATATTGTCCCGGAGGTGCACTGAAGTCTTATCTCATAAAAAACAGGAGAAAGAAGCTGGCTTTTAAAGTGGTTGTCCAACTGGCACTCGATCTTGCAAGAGGGTTGAGTTATCTCCACTCACAAAAGATTGTCCACCGAGATGTTAAGACAGAAAATATGCTTCTGGACAAGACACGAACATTGAAAATAGCTGACTTTGGAGTAGCTCGTATTGAGGCTTCCAATCCTCATGACATGACTGGTGAAACTGGAACTCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATATAACAGAAAGTGTGATGTGTACAGTTTCGGTATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCCGAAGTGACATCTGCTGTTGTACGTCAGAATCTGAGGCCAGAGATACCTCGCTGTTGCCCAAGCTCTCTGGCAAATGTAATGAAAAGATGCTGGGATGCCAATCCTGACAAACGGCCAGAGATGGATGAGGTGGTGTCTATGATTGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCTGGATCAGCCTCAAGGTTGTTTTTGTTTCCAAAGGTATCGTGGACCTTGA 1101 0.4559 MKEKSETGGGGYLRADQIDLKRLDEQLQRHLTRAWTMEKKKKEEDEYGGRSTQTRQEWEIDPSKLLIKSAIARGTFGSVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGTSELHMENGHIGMPNNVCCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMIEAIDTSKGGGMIPLDQPQGCFCFQRYRGP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1849 366 SUPERFAMILY Protein kinase-like (PK-like) 49 336 IPR011009 -
Glsi12g1849 366 Pfam Protein tyrosine and serine/threonine kinase 67 336 IPR001245 GO:0004672|GO:0006468
Glsi12g1849 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Glsi12g1849 366 FunFam Serine/threonine-protein kinase HT1 163 348 - -
Glsi12g1849 366 PRINTS Tyrosine kinase catalytic domain signature 198 216 IPR001245 GO:0004672|GO:0006468
Glsi12g1849 366 PRINTS Tyrosine kinase catalytic domain signature 308 330 IPR001245 GO:0004672|GO:0006468
Glsi12g1849 366 PRINTS Tyrosine kinase catalytic domain signature 264 286 IPR001245 GO:0004672|GO:0006468
Glsi12g1849 366 PRINTS Tyrosine kinase catalytic domain signature 160 173 IPR001245 GO:0004672|GO:0006468
Glsi12g1849 366 SMART serkin_6 65 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1849 366 FunFam Kinase suppressor of Ras 1 54 147 - -
Glsi12g1849 366 Gene3D Transferase(Phosphotransferase) domain 1 163 348 - -
Glsi12g1849 366 CDD STKc_MAP3K-like 71 337 - -
Glsi12g1849 366 Gene3D Phosphorylase Kinase; domain 1 53 146 - -
Glsi12g1849 366 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 340 - -
Glsi12g1849 366 ProSiteProfiles Protein kinase domain profile. 65 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1849 Glsi-ChrGlsi12 34381827 34385897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1849 13 366 MAP Kinase Kinase Kinase AT3G22750 69.188 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi12g1849 PK_Tyr_Ser-Thr 3.7e-64 CL0016