Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1846 ATGGAGTCCGGCCGCATTTTCTTCGATCCCTCCGCTCGCCTCGGGAACATGTTGTTCCTCGGAAATGGAGATCCCGTTTTTCGAGGAAGATCGATGGTGAGCATGGAGGAAAGCTCAAAGAAGCGACCCTTTTTCAGCTCAACGGAGGAATTGTTCGATGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGCCGCCTCACTCCTGAGCAGGTGCGTCTGCTGGAGAAAAGCTTTGAAACAGAGAACAAACTGGAGCCGGAACAGAAGACCCAGCTGGCCAAGAAGCTAGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGTTGGAAGACCAAGCAACTTGAAAGGGATTACGATATTCTCAAGTCTTCCTACGATTCCCTCCTTTCAAAGTATGACTCCATTGTCAAGGACAATGAAAACCTTAAATCTCAGATGGTATCCTTGAATGAGAAGCTTCAAGCTAAAGAGATGCCAGAAGCCCCATTACCAGATGAAAAAGCTGACCCACTTCTAATGGAAATAGCTCAAATATCAGCCCTCCCATTCAGCATCAAGCTGGAGGATCGTCTGAGCAGCGGCAGTGGTGGAAGTGCAGTGGTGGACGAGGATAGTCCACAGCTTCTTGTGGACAGCGTTGATTCATACTTTCCAGCTGACAATTATGGCGGATGCATGGCTGCATTCAATAGGGTTCAGTCGGAGGAGGATGACGGCAGTGACGATGGCCGGAGTTACTTCTCAGATGTGTTTGTGGCCGTCGAATCTGAGCACCAAAACCACGAAGAGAGAGAGGAATTTGATTGGTCGGTGTGGTCTTAA 843 0.497 MESGRIFFDPSARLGNMLFLGNGDPVFRGRSMVSMEESSKKRPFFSSTEELFDEEYYDEQLPEKKRRLTPEQVRLLEKSFETENKLEPEQKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSSYDSLLSKYDSIVKDNENLKSQMVSLNEKLQAKEMPEAPLPDEKADPLLMEIAQISALPFSIKLEDRLSSGSGGSAVVDEDSPQLLVDSVDSYFPADNYGGCMAAFNRVQSEEDDGSDDGRSYFSDVFVAVESEHQNHEEREEFDWSVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1846 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Glsi12g1846 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Glsi12g1846 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Glsi12g1846 280 Gene3D - 58 125 - -
Glsi12g1846 280 Coils Coil 139 159 - -
Glsi12g1846 280 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Glsi12g1846 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Glsi12g1846 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Glsi12g1846 280 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Glsi12g1846 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Glsi12g1846 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Glsi12g1846 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Glsi12g1846 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 224 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1846 Glsi-ChrGlsi12 34365161 34366988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1846 1 274 Homeobox Transcription Factor Family AT3G01470 61.290 3.88e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi12g1846 Homeodomain 2.5e-18 CL0123